RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 ARHGDIAP52565 204 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 NAA20P61599 178 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 JAG1P78504 1218 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 INPP5AQ14642 412 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 LONRF1Q17RB8 773 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 OTUD5Q96G74 571 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 INPP4AQ96PE3 977 aaPredicted RBP6.29□□□□□ -1.4
PTPRD-214ENST00000540109 C1orf50Q9BV19 199 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 APEX2Q9UBZ4 518 aa6.29□□□□□ -1.4
PTPRD-214ENST00000540109 CCDC85CA6NKD9 419 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 NOL4O94818 638 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ITIH2P19823 946 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 CCNFP41002 786 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PTDSS1P48651 473 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 TMPRSS15P98073 1019 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 WASHC5Q12768 1159 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 GRIK3Q13003 919 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 TTLL12Q14166 644 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SLFN12LQ6IEE8 588 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SULT1C3Q6IMI6 304 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 LUZP2Q86TE4 346 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ZBTB46Q86UZ6 589 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 VSIG10LQ86VR7 867 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 CDR2LQ86X02 465 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 RMDN1Q96DB5 314 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 BORCS6Q96GS4 357 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 HMG20AQ9NP66 347 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 RAB20Q9NX57 234 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 LMCD1Q9NZU5 365 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 AMACRQ9UHK6 382 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 FAM153AQ9UHL3 310 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ARPC4-TTLL3A0A0A6YYG9 625 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 STX7O15400 261 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SHOX2O60902 331 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SP100P23497 879 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 YWHABP31946 246 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 HSD17B3P37058 310 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 NR1H2P55055 460 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 AASDHQ4L235 1098 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 RUNDC3AQ59EK9 446 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 LRRC74BQ6ZQY2 392 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 GALNT6Q8NCL4 622 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ANKRD36BP1Q96IX9 119 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ADNPQ9H2P0 1102 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PCDH12Q9NPG4 1184 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 HACL1Q9UJ83 578 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SNTNA6NMZ2 147 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 CFAP99D6REC4 459 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 IL10P22301 178 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 MAPK10P53779 464 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 MFAP3P55082 362 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PSMC6P62333 389 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 FAM160B1Q5W0V3 765 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 RBM44Q6ZP01 1051 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PDIK1LQ8N165 341 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SEPT1Q8WYJ6 367 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 BEGAINQ9BUH8 593 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 OSBPL8Q9BZF1 889 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 INTS2Q9H0H0 1204 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 EFR3BQ9Y2G0 817 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 DTNAQ9Y4J8 743 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 IGSF9BQ9UPX0 1349 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 A8MUI8 341 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 TGFB1I1O43294 461 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 AKAP3O75969 853 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ARP10275 920 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PCSK2P16519 638 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 RARRES1P49788 294 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SERPINB9P50453 376 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 GFPT1Q06210 699 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SLC34A1Q06495 639 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PDAP1Q13442 181 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 MESDQ14696 234 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SURF1Q15526 300 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 XKR3Q5GH77 459 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ZNF677Q86XU0 584 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 MAP4K3Q8IVH8 894 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 CDAN1Q8IWY9 1227 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 BORCS5Q969J3 196 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 DEPDC7Q96QD5 511 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 NTPCRQ9BSD7 190 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 FANCEQ9HB96 536 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 TMBIM4Q9HC24 238 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 GPBP1L1Q9HC44 474 aaPredicted RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PHIPQ8WWQ0 1821 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 ZMYM2Q9UBW7 1377 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 COL4A5P29400 1685 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 NPHP3-ACAD11A0A0J9YXS1 232 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 TMEM120BA0PK00 339 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 NFIBO00712 420 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 DHX15O43143 795 aaKnown RBP6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SLC25A27O95847 323 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 EPHB2P29323 1055 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 CASP2P42575 452 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 CASP5P51878 434 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 PTK2Q05397 1052 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 TTMPQ5BVD1 217 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 SDE2Q6IQ49 451 aa6.28□□□□□ -1.4
PTPRD-214ENST00000540109 NCAPG2Q86XI2 1143 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms