RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GZF1Q9H116 711 aaPredicted RBP14.44□□□□□ -0.1
SS18-204ENST00000539244 XYLT2Q9H1B5 865 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 DPEP3Q9H4B8 488 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 VRTNQ9H8Y1 702 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 POLMQ9NP87 494 aaPredicted RBP14.44□□□□□ -0.1
SS18-204ENST00000539244 CFAP97Q9P2B7 532 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 PCNX2A6NKB5 2137 aa14.44□□□□□ -0.1
SS18-204ENST00000539244 GON4LQ3T8J9 2241 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 ADAM23O75077 832 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 KLF8O95600 359 aaPredicted RBP14.43□□□□□ -0.1
SS18-204ENST00000539244 MBL2P11226 248 aaPredicted RBP14.43□□□□□ -0.1
SS18-204ENST00000539244 ADH5P11766 374 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 YWHAQP27348 245 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 ATICP31939 592 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 TIE1P35590 1138 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 DPP6P42658 865 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 DHPSP49366 369 aaPredicted RBP14.43□□□□□ -0.1
SS18-204ENST00000539244 TUBP50607 506 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 TNNC1P63316 161 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 AMPD3Q01432 767 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 LMAN2Q12907 356 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 FAM26FQ5R3K3 315 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 PEAR1Q5VY43 1037 aaPredicted RBP14.43□□□□□ -0.1
SS18-204ENST00000539244 LPCAT2Q7L5N7 544 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 ETFBKMTQ8IXQ9 262 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 C12orf56Q8IXR9 622 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 XXYLT1Q8NBI6 393 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 RDH13Q8NBN7 331 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 KCNV2Q8TDN2 545 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 ZNF516Q92618 1163 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 TMEM121BQ9BXQ6 578 aaPredicted RBP14.43□□□□□ -0.1
SS18-204ENST00000539244 ARHGEF4Q9NR80 690 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 IL37Q9NZH6 218 aa14.43□□□□□ -0.1
SS18-204ENST00000539244 FAM92AA1XBS5 289 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 A8MXQ7 604 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 HOXC11O43248 304 aaPredicted RBP14.42□□□□□ -0.1
SS18-204ENST00000539244 COCHO43405 550 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 PPP6R2O75170 966 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 ABL1P00519 1130 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 HOXD12P35452 270 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 ASIC1P78348 528 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 GAD2Q05329 585 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 BYSLQ13895 437 aaKnown RBP14.42□□□□□ -0.1
SS18-204ENST00000539244 MAP7D1Q3KQU3 841 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 LY6G5CQ5SRR4 150 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 EMC10Q5UCC4 262 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 UNQ6494/PRO21346Q6UXR6 183 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 SYT12Q8IV01 421 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 KDF1Q8NAX2 398 aaPredicted RBP14.42□□□□□ -0.1
SS18-204ENST00000539244 SCFD1Q8WVM8 642 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 RLN3Q8WXF3 142 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 PIGKQ92643 395 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 FBXO32Q969P5 355 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 SYAP1Q96A49 352 aaPredicted RBP14.42□□□□□ -0.1
SS18-204ENST00000539244 CCDC127Q96BQ5 260 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 C7orf25Q9BPX7 421 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 COMMD8Q9NX08 183 aa14.42□□□□□ -0.1
SS18-204ENST00000539244 CGNQ9P2M7 1197 aaKnown RBP14.42□□□□□ -0.1
SS18-204ENST00000539244 MBD1Q9UIS9 605 aaPredicted RBP14.42□□□□□ -0.1
SS18-204ENST00000539244 FAM208BQ5VWN6 2430 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 C1QTNF9BB2RNN3 333 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 CLDN5O00501 218 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 SCAMP3O14828 347 aaKnown RBP14.41□□□□□ -0.1
SS18-204ENST00000539244 CLIC2O15247 247 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 SPTLC2O15270 562 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 ZDHHC11BP0C7U3 371 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 C1QTNF9P0C862 333 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 PTGER3P43115 390 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 CYP2J2P51589 502 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 MYL6P60660 151 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 TRPC3Q13507 836 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 STK38Q15208 465 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 BMT2Q1RMZ1 405 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 PREPLQ4J6C6 727 aaPredicted RBP14.41□□□□□ -0.1
SS18-204ENST00000539244 TRIM61Q5EBN2 209 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 HECTD3Q5T447 861 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 SLC23A3Q6PIS1 610 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 PAQR9Q6ZVX9 377 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 UNC13DQ70J99 1090 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 IQUBQ8NA54 791 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 NUSAP1Q9BXS6 441 aaKnown RBP14.41□□□□□ -0.1
SS18-204ENST00000539244 MAGEF1Q9HAY2 307 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 TMEM74BQ9NUR3 256 aa14.41□□□□□ -0.1
SS18-204ENST00000539244 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 STX6O43752 255 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 SLC5A3P53794 718 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 CLDN10P78369 228 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 KDSRQ06136 332 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 IFRD2Q12894 506 aaPredicted RBP14.4□□□□□ -0.1
SS18-204ENST00000539244 FOXC1Q12948 553 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 TRMT11Q7Z4G4 463 aaKnown RBP14.4□□□□□ -0.1
SS18-204ENST00000539244 FAM35AQ86V20 835 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 TTC30AQ86WT1 665 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 TMEFF1Q8IYR6 380 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 FRMD1Q8N878 549 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 HMGB4Q8WW32 186 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 DHX58Q96C10 678 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 TNIP3Q96KP6 325 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 KCNK16Q96T55 309 aa14.4□□□□□ -0.1
SS18-204ENST00000539244 ADAM33Q9BZ11 813 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms