RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 C6orf52Q5T4I8 152 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 PLEKHA7Q6IQ23 1121 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 NEK10Q6ZWH5 1172 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 IFNLR1Q8IU57 520 aaPredicted RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 DCP2Q8IU60 420 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 CADM3Q8N126 398 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 DLG3Q92796 817 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 VTI1AQ96AJ9 217 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 WNK4Q96J92 1243 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 EGLN2Q96KS0 407 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 CSRNP1Q96S65 589 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 TRIM56Q9BRZ2 755 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 CENPOQ9BU64 300 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 RPF2Q9H7B2 306 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 RMND5AQ9H871 391 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 ARMT1Q9H993 441 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 VPS37BQ9H9H4 285 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 ARIH1Q9Y4X5 557 aaPredicted RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 CPQQ9Y646 472 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 MARF1Q9Y4F3 1742 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 LPXNO60711 386 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 BBOX1O75936 387 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 RFX1P22670 979 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 NR2F2P24468 414 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 NMT1P30419 496 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 ADSLP30566 484 aaPredicted RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 TECP42680 631 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 FXR2P51116 673 aaKnown RBP eCLIP12.9□□□□□ -0.34
USP3-203ENST00000538686 CD300CQ08708 224 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 KRT80Q6KB66 452 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 ADGRD1Q6QNK2 874 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 SETD3Q86TU7 594 aaPredicted RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 ZNF598Q86UK7 904 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 NGDNQ8NEJ9 315 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 HCAR2Q8TDS4 363 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 C1orf54Q8WWF1 131 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 HSPH1Q92598 858 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 CMTM5Q96DZ9 223 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 CNDP2Q96KP4 475 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 YME1L1Q96TA2 773 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 NAP1L4Q99733 375 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 RIOK1Q9BRS2 568 aaKnown RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 MKNK1Q9BUB5 465 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 RPAP3Q9H6T3 665 aaPredicted RBP12.9□□□□□ -0.34
USP3-203ENST00000538686 VPS51Q9UID3 782 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 RIMS3Q9UJD0 308 aa12.9□□□□□ -0.34
USP3-203ENST00000538686 ROBO3Q96MS0 1386 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 DUOX1Q9NRD9 1551 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 SNRPA1P09661 255 aaKnown RBP12.89□□□□□ -0.35
USP3-203ENST00000538686 GNL1P36915 607 aaPredicted RBP12.89□□□□□ -0.35
USP3-203ENST00000538686 SLC25A3Q00325 362 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 PDIA2Q13087 525 aaKnown RBP12.89□□□□□ -0.35
USP3-203ENST00000538686 CAVIN4Q5BKX8 364 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 MDH1BQ5I0G3 518 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 GLIS3Q8NEA6 775 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 RMDN1Q96DB5 314 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 APOPT1Q96IL0 206 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 PNMA5Q96PV4 448 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 SERPINI1Q99574 410 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 FRMD8Q9BZ67 464 aaPredicted RBP12.89□□□□□ -0.35
USP3-203ENST00000538686 SHCBP1LQ9BZQ2 653 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 FAM96AQ9H5X1 160 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 THAP1Q9NVV9 213 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 DOCK2Q92608 1830 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 MYOCOSA0A1B0GUC4 107 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 A0A1W2PQ67 120 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 ARHGEF37A1IGU5 675 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 H3BMQ9 156 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 MYO1DO94832 1006 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 FYNP06241 537 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 MCF2P10911 925 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 MYL4P12829 197 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 BGNP21810 368 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 IFNA8P32881 189 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 ETV4P43268 484 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 NDST2P52849 883 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 GK3PQ14409 553 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 MESDQ14696 234 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 ZNF846Q147U1 533 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 CCDC142Q17RM4 750 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 TMEM119Q4V9L6 283 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 CARM1Q86X55 608 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 CRLF3Q8IUI8 442 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 MAGEB6Q8N7X4 407 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 LSMEM1Q8N8F7 131 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 TOR1AIP2Q8NFQ8 470 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 TNIP2Q8NFZ5 429 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 DNAJC19Q96DA6 116 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 ZNF486Q96H40 463 aaPredicted RBP12.89□□□□□ -0.35
USP3-203ENST00000538686 COG8Q96MW5 612 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 RILPQ96NA2 401 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 ALPK1Q96QP1 1244 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 TCF12Q99081 682 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 DHRS9Q9BPW9 319 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 C2orf49Q9BVC5 232 aaPredicted RBP12.89□□□□□ -0.35
USP3-203ENST00000538686 SNX25Q9H3E2 840 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 POU2F3Q9UKI9 436 aa12.89□□□□□ -0.35
USP3-203ENST00000538686 LTN1O94822 1766 aa12.88□□□□□ -0.35
USP3-203ENST00000538686 C2orf71A6NGG8 1288 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms