RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 GRIA2P42262 883 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 ADARP55265 1226 aaKnown RBP9.4□□□□□ -0.91
SNHG1-209ENST00000538654 KDSRQ06136 332 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 DCTN2Q13561 401 aaKnown RBP9.4□□□□□ -0.91
SNHG1-209ENST00000538654 UGT2A3Q6UWM9 527 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 UNC5DQ6UXZ4 953 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 TRIM72Q6ZMU5 477 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 FBXO11Q86XK2 927 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 TREML1Q86YW5 311 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 GDPD5Q8WTR4 605 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 APBB2Q92870 758 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 TEKT1Q969V4 418 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 CLMNQ96JQ2 1002 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 FAM111AQ96PZ2 611 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 WDR11Q9BZH6 1224 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 ALG13Q9NP73 1137 aaKnown RBP9.4□□□□□ -0.91
SNHG1-209ENST00000538654 DMTF1Q9Y222 760 aa9.4□□□□□ -0.91
SNHG1-209ENST00000538654 A0A0J9YVX5 310 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CCNT2O60583 730 aaKnown RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ZC3H11AO75152 810 aaKnown RBP eCLIP9.39□□□□□ -0.911e-6■■□□□ 11.7
SNHG1-209ENST00000538654 TMEM127O75204 238 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 PSMD10O75832 226 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ZSCAN5DPP0CG00 497 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 DNAJB2P25686 324 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 PTPN7P35236 360 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ECE1P42892 770 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 TAS2R40P59535 323 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 OLFML2BQ68BL8 750 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 TMC7Q7Z402 723 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ZNF554Q86TJ5 538 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CLEC10AQ8IUN9 316 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 FBXL13Q8NEE6 735 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CCDC17Q96LX7 622 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CCDC106Q9BWC9 280 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 MRPS26Q9BYN8 205 aaKnown RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 FRMD8P1Q9BZ68 369 aaPredicted RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 BCS1LQ9Y276 419 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 PCDHB2Q9Y5E7 798 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 C15orf38-AP3S2A0A0A6YYH1 394 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 PABPN1LA6NDY0 278 aaKnown RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ARHGAP42A6NI28 874 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 E7ESA3 106 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 SGK1O00141 431 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CASQ2O14958 399 aaPredicted RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 DENRO43583 198 aaKnown RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 SPAG6O75602 509 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 COL6A1P12109 1028 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 AOC1P19801 751 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 SSTR1P30872 391 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 GCNT1Q02742 428 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 PTK7Q13308 1070 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ADRM1Q16186 407 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 AOC3Q16853 763 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 SFT2D3Q587I9 215 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 LRRC38Q5VT99 294 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 PPP2R2DQ66LE6 453 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 RBM44Q6ZP01 1051 aaKnown RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ANO5Q75V66 913 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ARPINQ7Z6K5 226 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 NLRX1Q86UT6 975 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CRLF3Q8IUI8 442 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 MAP7D3Q8IWC1 876 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 PDIK1LQ8N165 341 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 MARVELD2Q8N4S9 558 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 DIS3LQ8TF46 1054 aaKnown RBP9.39□□□□□ -0.91
SNHG1-209ENST00000538654 DDI1Q8WTU0 396 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 LRRN4Q8WUT4 740 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 SEMA4DQ92854 862 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CLPTM1LQ96KA5 538 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 SLITRK1Q96PX8 696 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 CBWD1Q9BRT8 395 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 ADAM33Q9BZ11 813 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 SNCAIPQ9Y6H5 919 aa9.39□□□□□ -0.91
SNHG1-209ENST00000538654 COL5A3P25940 1745 aaPredicted RBP9.38□□□□□ -0.91
SNHG1-209ENST00000538654 STRCP1A6NGW2 1772 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 IGLV3-22A0A075B6J6 115 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 A0A088AWK7 358 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 TXNDC9O14530 226 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 COPEO14579 308 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 VILLO15195 856 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 GAS7O60861 476 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 FAM155BO75949 473 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 HNRNPCP07910 306 aaKnown RBP eCLIP9.38□□□□□ -0.913e-9■■□□□ 13.7
SNHG1-209ENST00000538654 INHBAP08476 426 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 SERPINB8P50452 374 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 AQP4P55087 323 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 MSLNQ13421 630 aaPredicted RBP9.38□□□□□ -0.91
SNHG1-209ENST00000538654 SERINC3Q13530 473 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 EFTUD2Q15029 972 aaKnown RBP eCLIP9.38□□□□□ -0.915e-23■■■■■ 42.3
SNHG1-209ENST00000538654 OASLQ15646 514 aaKnown RBP9.38□□□□□ -0.91
SNHG1-209ENST00000538654 BORAQ6PGQ7 559 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 TPTE2Q6XPS3 522 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 MON1BQ7L1V2 547 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 GLIS1Q8NBF1 620 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 SLC26A7Q8TE54 656 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 STON2Q8WXE9 905 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 P2RX7Q99572 595 aaKnown RBP9.38□□□□□ -0.91
SNHG1-209ENST00000538654 TBCCD1Q9NVR7 557 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 BTBD7Q9P203 1132 aa9.38□□□□□ -0.91
SNHG1-209ENST00000538654 CCDC163A0A0D9SF12 145 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms