RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 USP17L4A6NCW7 530 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 SMCO2A6NFE2 343 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 TRIM64CA6NLI5 447 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 GOLGA8TH3BQL2 631 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 FAM58BPP0C7Q3 252 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 HSPA8P11142 646 aaKnown RBP11.11□□□□□ -0.63
RTN3-208ENST00000537981 GNALP38405 381 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 TRPC1P48995 793 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 ACADVLP49748 655 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 RPS3AP61247 264 aaKnown RBP11.11□□□□□ -0.63
RTN3-208ENST00000537981 BNIP3Q12983 259 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 KCTD2Q14681 263 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 COG2Q14746 738 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 INAQ16352 499 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 BORAQ6PGQ7 559 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 USP17L1Q7RTZ2 530 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 ZNF804AQ7Z570 1209 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 GPBP1Q86WP2 473 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 CLVS1Q8IUQ0 354 aaPredicted RBP11.11□□□□□ -0.63
RTN3-208ENST00000537981 TTC13Q8NBP0 860 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 C12orf43Q96C57 262 aaKnown RBP11.11□□□□□ -0.63
RTN3-208ENST00000537981 CGREF1Q99674 301 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 TBC1D23Q9NUY8 699 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 RABL2AQ9UBK7 228 aaPredicted RBP11.11□□□□□ -0.63
RTN3-208ENST00000537981 CDH22Q9UJ99 828 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 ITGB1BP2Q9UKP3 347 aa11.11□□□□□ -0.63
RTN3-208ENST00000537981 MAGEB6P1A0A0J9YX57 407 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 A0A1W2PPW3 197 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 KRBA1A5PL33 1030 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PSMD12O00232 456 aaPredicted RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 PLOD2O00469 737 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 FSCN2O14926 492 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 CASQ2O14958 399 aaPredicted RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 CNOT3O75175 753 aaKnown RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 GUCY1B2O75343 617 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 TGFB3P10600 412 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 NAT2P11245 290 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 VDRP11473 427 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PTPN1P18031 435 aaKnown RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 FGFR2P21802 821 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 S100A1P23297 94 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 SLC18A1P54219 525 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 GNA12Q03113 381 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 SPIDRQ14159 915 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 ARL13BQ3SXY8 428 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 FGD3Q5JSP0 725 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 ZCCHC23Q6ZST2 131 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PASD1Q8IV76 773 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PNMA1Q8ND90 353 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 TBC1D15Q8TC07 691 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 RPGRQ92834 1020 aaKnown RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 HPS1Q92902 700 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 GFM2Q969S9 779 aaKnown RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 WDR83Q9BRX9 315 aaKnown RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 ISCA1Q9BUE6 129 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 RUSC1Q9BVN2 902 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 HERC2P3Q9BVR0 1158 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 VTA1Q9NP79 307 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 KIAA1024Q9UPX6 916 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PCDHGA8Q9Y5G5 932 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 ASTN1O14525 1302 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 CLUHO75153 1309 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 RREB1Q92766 1687 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 GGPS1O95749 300 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 TOP3BO95985 862 aaKnown RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 ETV4P43268 484 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 GSSP48637 474 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 C21orf59P57076 290 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PSMC6P62333 389 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 E2F2Q14209 437 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 CCNG2Q16589 344 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 NRF1Q16656 503 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 TBC1D10BQ4KMP7 808 aaPredicted RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 MSS51Q4VC12 460 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 SLC27A3Q5K4L6 730 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 C10orf62Q5T681 223 aaPredicted RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 USP43Q70EL4 1123 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 TRIML2Q8N7C3 387 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 DDHD1Q8NEL9 900 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 TSPAN14Q8NG11 270 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PTCD2Q8WV60 388 aaKnown RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 SLCO2A1Q92959 643 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 ISOC1Q96CN7 298 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 BIRC8Q96P09 236 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 AGPAT1Q99943 283 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 CDH19Q9H159 772 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 COPS7BQ9H9Q2 264 aaPredicted RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 KLHL11Q9NVR0 708 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PSMC3IPQ9P2W1 217 aaPredicted RBP11.1□□□□□ -0.63
RTN3-208ENST00000537981 SOX13Q9UN79 622 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 PRELID1Q9Y255 219 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.1□□□□□ -0.63
RTN3-208ENST00000537981 ATP8B3O60423 1300 aa11.1□□□□□ -0.63
RTN3-208ENST00000537981 LOC100653049A0A140TA62 436 aa11.09□□□□□ -0.63
RTN3-208ENST00000537981 SOBPA7XYQ1 873 aa11.09□□□□□ -0.63
RTN3-208ENST00000537981 PIK3CDO00329 1044 aa11.09□□□□□ -0.63
RTN3-208ENST00000537981 TIMM44O43615 452 aa11.09□□□□□ -0.63
RTN3-208ENST00000537981 SULT1C4O75897 302 aa11.09□□□□□ -0.63
RTN3-208ENST00000537981 KRT34O76011 436 aa11.09□□□□□ -0.63
RTN3-208ENST00000537981 UQCRFS1P1P0C7P4 283 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms