RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 TIPINQ9BVW5 301 aa13.96□□□□□ -0.17
HDAC4-214ENST00000535493 ASCC2Q9H1I8 757 aaPredicted RBP13.96□□□□□ -0.17
HDAC4-214ENST00000535493 SSU72Q9NP77 194 aaKnown RBP13.96□□□□□ -0.17
HDAC4-214ENST00000535493 ZNF212Q9UDV6 495 aa13.96□□□□□ -0.17
HDAC4-214ENST00000535493 POLIQ9UNA4 740 aa13.96□□□□□ -0.17
HDAC4-214ENST00000535493 CTDP1Q9Y5B0 961 aaPredicted RBP13.96□□□□□ -0.17
HDAC4-214ENST00000535493 NRXN2Q9P2S2 1712 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 KLHL33A6NCF5 533 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 I3L4J1 428 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 ABLIM1O14639 778 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 HNRNPCL1O60812 293 aaKnown RBP13.96□□□□□ -0.18
HDAC4-214ENST00000535493 CALB1P05937 261 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 NR3C2P08235 984 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 F7P08709 466 aaPredicted RBP13.96□□□□□ -0.18
HDAC4-214ENST00000535493 CLDN10P78369 228 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 CDC16Q13042 620 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 RNF111Q6ZNA4 994 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 POLNQ7Z5Q5 900 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 PCGF5Q86SE9 256 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 RSPH3Q86UC2 560 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 MCF2L2Q86YR7 1114 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 TMPRSS6Q8IU80 811 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 NUDCD3Q8IVD9 361 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 E2F7Q96AV8 911 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 CPXM1Q96SM3 734 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 EPAS1Q99814 870 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 IMPG2Q9BZV3 1241 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 GPATCH2LQ9NWQ4 482 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 NDE1Q9NXR1 346 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 RPL26L1Q9UNX3 145 aaKnown RBP13.96□□□□□ -0.18
HDAC4-214ENST00000535493 FZD1Q9UP38 647 aa13.96□□□□□ -0.18
HDAC4-214ENST00000535493 CNTNAP1P78357 1384 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 CNTNAP2Q9UHC6 1331 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 LOC100653049A0A140TA62 436 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 E7ESA3 106 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 H7C0C1 242 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 NPM3O75607 178 aaKnown RBP13.95□□□□□ -0.18
HDAC4-214ENST00000535493 KRT34O76011 436 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 APRTP07741 180 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 SFNP31947 248 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 ATP5OP48047 213 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 DSG1Q02413 1049 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 KRT72Q14CN4 511 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 EMC2Q15006 297 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 SPDYAQ5MJ70 313 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 MTHFD1LQ6UB35 978 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.95□□□□□ -0.18
HDAC4-214ENST00000535493 DEPTORQ8TB45 409 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 ALKBH8Q96BT7 664 aaKnown RBP13.95□□□□□ -0.18
HDAC4-214ENST00000535493 ECSITQ9BQ95 431 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 UBE2OQ9C0C9 1292 aaKnown RBP13.95□□□□□ -0.18
HDAC4-214ENST00000535493 PDLIM7Q9NR12 457 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 MAD1L1Q9Y6D9 718 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 A6NJR5 290 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 PEX10O60683 326 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 TOM1L1O75674 476 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 MIPP30301 263 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 LAMB3Q13751 1172 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 CNPY1Q3B7I2 92 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 SLC27A3Q5K4L6 730 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 LRRC38Q5VT99 294 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 DENND5BQ6ZUT9 1274 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 NIPA1Q7RTP0 329 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 NETO2Q8NC67 525 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 SLC26A7Q8TE54 656 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 FAM151AQ8WW52 585 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 PLA2G4CQ9UP65 541 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 TEX264Q9Y6I9 313 aa13.95□□□□□ -0.18
HDAC4-214ENST00000535493 SPECC1L-ADORA2AF8WAN1 911 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 MCF2LO15068 1137 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 OPHN1O60890 802 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 OR6B1O95007 311 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 KRT19P08727 400 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 GRIA1P42261 906 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 MCCD1P59942 119 aaPredicted RBP13.94□□□□□ -0.18
HDAC4-214ENST00000535493 ACTR2P61160 394 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 SP2Q02086 613 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 SLC18A2Q05940 514 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 C15orf59Q2T9L4 293 aaPredicted RBP13.94□□□□□ -0.18
HDAC4-214ENST00000535493 BBS12Q6ZW61 710 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 CHSY1Q86X52 802 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 NDUFAF2Q8N183 169 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 MPP5Q8N3R9 675 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 MCPH1Q8NEM0 835 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 ATP6V0A1Q93050 837 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 TUBB6Q9BUF5 446 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 PLAC1Q9HBJ0 212 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 SLC38A10Q9HBR0 1119 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 DDX56Q9NY93 547 aaKnown RBP13.94□□□□□ -0.18
HDAC4-214ENST00000535493 IL1RAPL1Q9NZN1 696 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 PLLPQ9Y342 182 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 DOCK5Q9H7D0 1870 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 ANKRD33BA6NCL7 494 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 TXNDC9O14530 226 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 ITM2AO43736 263 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 CIB2O75838 187 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 TM7SF2O76062 418 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 TGDSO95455 350 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 CSH1P0DML2 217 aa13.94□□□□□ -0.18
HDAC4-214ENST00000535493 CSH2P0DML3 217 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms