RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 ALDH1A2O94788 518 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 OLFM2O95897 454 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 APODP05090 189 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 ZNF806P0C7X5 589 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 KRT13P13646 458 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 OPRD1P41143 372 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 SLC5A3P53794 718 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 DLG4P78352 724 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 ZXDBP98169 803 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 SF3A2Q15428 464 aaKnown RBP15.62■□□□□ 0.09
VPS28-215ENST00000531924 PPM1JQ5JR12 505 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 C11orf74Q86VG3 221 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 CCDC33Q8N5R6 958 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 CCDC150Q8NCX0 1101 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 SCAMP5Q8TAC9 235 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 USP33Q8TEY7 942 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 EZH1Q92800 747 aaPredicted RBP15.62■□□□□ 0.09
VPS28-215ENST00000531924 ELMO3Q96BJ8 720 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 ZC3H10Q96K80 434 aaKnown RBP15.62■□□□□ 0.09
VPS28-215ENST00000531924 KCTD10Q9H3F6 313 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 TMEM30AQ9NV96 361 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 COMMD8Q9NX08 183 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 CIZ1Q9ULV3 898 aaPredicted RBP15.62■□□□□ 0.09
VPS28-215ENST00000531924 ATP6V1DQ9Y5K8 247 aa15.62■□□□□ 0.09
VPS28-215ENST00000531924 DENND4CQ5VZ89 1909 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 E2F8A0AVK6 867 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 K7EQS6 105 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 IKBKBO14920 756 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 COCHO43405 550 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 VNN1O95497 513 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 ADH5P11766 374 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 RPL13P26373 211 aaKnown RBP15.61■□□□□ 0.09
VPS28-215ENST00000531924 MPLP40238 635 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 NDST1P52848 882 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 MRPS21P82921 87 aaKnown RBP15.61■□□□□ 0.09
VPS28-215ENST00000531924 ORC1Q13415 861 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 ZACNQ401N2 412 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 PLK5Q496M5 336 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 PREPLQ4J6C6 727 aaPredicted RBP15.61■□□□□ 0.09
VPS28-215ENST00000531924 ANO7Q6IWH7 933 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 NUDT18Q6ZVK8 323 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 SV2AQ7L0J3 742 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 UNC93AQ86WB7 457 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 FUKQ8N0W3 1084 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 SLC2A14Q8TDB8 520 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 TMEM174Q8WUU8 243 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 CCDC34Q96HJ3 373 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 SDCBP2Q9H190 292 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 FBXO44Q9H4M3 255 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.61■□□□□ 0.092e-6■■■■■ 30
VPS28-215ENST00000531924 ARHGEF4Q9NR80 690 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 VPS45Q9NRW7 570 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 GMIPQ9P107 970 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 NCOR2Q9Y618 2525 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 OBSL1O75147 1896 aa15.61■□□□□ 0.09
VPS28-215ENST00000531924 DCLK1O15075 740 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 KAT7O95251 611 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 FAM200BP0CF97 657 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 IRF1P10914 325 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 CCDC130P13994 396 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 NR2F2P24468 414 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 EIF2DP41214 584 aaKnown RBP15.6■□□□□ 0.09
VPS28-215ENST00000531924 GRIA2P42262 883 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 SLC6A11P48066 632 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 TUBP50607 506 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 VAMP7P51809 220 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 MAP3K7CLP57077 242 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 CREB5Q02930 508 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 GAD2Q05329 585 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 GOLGA8FQ08AF8 430 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 GOLGA8DPQ0D2H9 430 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 ANO4Q32M45 955 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 RHBDF2Q6PJF5 856 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 OTUB2Q96DC9 234 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 TPSD1Q9BZJ3 242 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 CCSER2Q9H7U1 834 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 TLR8Q9NR97 1041 aaKnown RBP15.6■□□□□ 0.09
VPS28-215ENST00000531924 FAM49BQ9NUQ9 324 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 BCCIPQ9P287 314 aaKnown RBP eCLIP15.6■□□□□ 0.09
VPS28-215ENST00000531924 MMP17Q9ULZ9 603 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 INVSQ9Y283 1065 aa15.6■□□□□ 0.09
VPS28-215ENST00000531924 TBC1D3BA6NDS4 549 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 TNFRSF10BO14763 440 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 KLF8O95600 359 aaPredicted RBP15.59■□□□□ 0.09
VPS28-215ENST00000531924 ASS1P00966 412 aaKnown RBP15.59■□□□□ 0.09
VPS28-215ENST00000531924 HLA-DRAP01903 254 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 ADORA2BP29275 332 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 TIE1P35590 1138 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 NDUFA8P51970 172 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 KDSRQ06136 332 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 EOGTQ5NDL2 527 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 LY6G5CQ5SRR4 150 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 SPOPLQ6IQ16 392 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 PAQR9Q6ZVX9 377 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 INTS8Q75QN2 995 aaKnown RBP15.59■□□□□ 0.09
VPS28-215ENST00000531924 CRYBG2Q8N1P7 616 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 ALLCQ8N6M5 410 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 TXNDC5Q8NBS9 432 aaKnown RBP15.59■□□□□ 0.09
VPS28-215ENST00000531924 JAKMIP2Q96AA8 810 aa15.59■□□□□ 0.09
VPS28-215ENST00000531924 SCAND2PQ9GZW5 306 aaPredicted RBP15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms