RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 FAM49BQ9NUQ9 324 aa13.79□□□□□ -0.2
CPSF1-204ENST00000529288 DMAC2Q9NW81 257 aa13.79□□□□□ -0.2
CPSF1-204ENST00000529288 GMIPQ9P107 970 aa13.79□□□□□ -0.2
CPSF1-204ENST00000529288 COCHO43405 550 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 RHOBTB1O94844 696 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 EPN2O95208 641 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 APODP05090 189 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 PRR29P0C7W0 189 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 ADORA2BP29275 332 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 TIE1P35590 1138 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 NDUFA8P51970 172 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 CREB5Q02930 508 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 ELF2Q15723 593 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 PLK5Q496M5 336 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 ANO7Q6IWH7 933 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 PAQR9Q6ZVX9 377 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 SV2AQ7L0J3 742 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 DDX42Q86XP3 938 aaKnown RBP eCLIP13.78□□□□□ -0.2
CPSF1-204ENST00000529288 SLC9A9Q8IVB4 645 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 SFTPA1Q8IWL2 248 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 NAT16Q8N8M0 369 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 SLC2A14Q8TDB8 520 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 USP33Q8TEY7 942 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 SMARCD1Q96GM5 515 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 LOXL4Q96JB6 756 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 PNKPQ96T60 521 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 CCSER2Q9H7U1 834 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 VRTNQ9H8Y1 702 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 ZDHHC4Q9NPG8 344 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 HMGXB4Q9UGU5 601 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 USP25Q9UHP3 1055 aa13.78□□□□□ -0.2
CPSF1-204ENST00000529288 KIF26AQ9ULI4 1882 aaPredicted RBP13.78□□□□□ -0.2
CPSF1-204ENST00000529288 FOXD2O60548 495 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-204ENST00000529288 AKAP3O75969 853 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 BEST1O76090 585 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 KIF20AO95235 890 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 KLF8O95600 359 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-204ENST00000529288 OLFM2O95897 454 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 ADH1CP00326 375 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 HLA-DRAP01903 254 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 ZNF806P0C7X5 589 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 TRIM49P0CI25 452 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 TRIM49CP0CI26 452 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 ADH5P11766 374 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 TRIM21P19474 475 aaKnown RBP13.77□□□□□ -0.21
CPSF1-204ENST00000529288 MPLP40238 635 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 VAMP7P51809 220 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 CLDN10P78369 228 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 GAB4Q2WGN9 574 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 ANO4Q32M45 955 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 ZACNQ401N2 412 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 USP39Q53GS9 565 aaKnown RBP13.77□□□□□ -0.21
CPSF1-204ENST00000529288 LY6G5CQ5SRR4 150 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 EMC10Q5UCC4 262 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 BTBD8Q5XKL5 378 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 RHBDF2Q6PJF5 856 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 C12orf40Q86WS4 652 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 FUKQ8N0W3 1084 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 C12orf29Q8N999 325 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 TXNDC5Q8NBS9 432 aaKnown RBP13.77□□□□□ -0.21
CPSF1-204ENST00000529288 TMC2Q8TDI7 906 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 OVCA2Q8WZ82 227 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 SMOQ99835 787 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 DUSP15Q9H1R2 295 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-204ENST00000529288 ARHGEF4Q9NR80 690 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 RXFP3Q9NSD7 469 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 TBC1D14Q9P2M4 693 aa13.77□□□□□ -0.21
CPSF1-204ENST00000529288 E2F8A0AVK6 867 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 TNFRSF10BO14763 440 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 KAT7O95251 611 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 KRT13P13646 458 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 CD58P19256 250 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 NR2F2P24468 414 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 GCLMP48507 274 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 GAD2Q05329 585 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 TCEAL6Q6IPX3 200 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 PGBD3Q8N328 593 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 ALLCQ8N6M5 410 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 TAF4BQ92750 862 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 TCEAL3Q969E4 200 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 ZC3H10Q96K80 434 aaKnown RBP13.76□□□□□ -0.21
CPSF1-204ENST00000529288 CNTNAP3BQ96NU0 1288 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 CNTNAP3Q9BZ76 1288 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 IMPG2Q9BZV3 1241 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 BCCIPQ9P287 314 aaKnown RBP eCLIP13.76□□□□□ -0.21
CPSF1-204ENST00000529288 EBF1Q9UH73 591 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 HPSEQ9Y251 543 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 DNAH14Q0VDD8 3507 aa13.76□□□□□ -0.21
CPSF1-204ENST00000529288 ZNF638Q14966 1978 aaKnown RBP13.75□□□□□ -0.21
CPSF1-204ENST00000529288 TBC1D3BA6NDS4 549 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 ALDH1A2O94788 518 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 TBX18O95935 607 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 ASS1P00966 412 aaKnown RBP13.75□□□□□ -0.21
CPSF1-204ENST00000529288 MYL1P05976 194 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 FAM200BP0CF97 657 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 ASPAP45381 313 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 MRPS21P82921 87 aaKnown RBP13.75□□□□□ -0.21
CPSF1-204ENST00000529288 MESP2Q0VG99 397 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 STPG1Q5TH74 334 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 UNC93AQ86WB7 457 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms