RNA–Protein interactions for RNA: ENST00000527027.1

PTPRU-210, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 3

Gene PTPRU, Length 619 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-210ENST00000527027 THADAQ6YHU6 1953 aa17.14■□□□□ 0.33
PTPRU-210ENST00000527027 NUP205Q92621 2012 aa17.14■□□□□ 0.33
PTPRU-210ENST00000527027 MYO16Q9Y6X6 1858 aa17.14■□□□□ 0.33
PTPRU-210ENST00000527027 TMEM8BA6NDV4 472 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 ADAM23O75077 832 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 DLATP10515 647 aaKnown RBP17.13■□□□□ 0.33
PTPRU-210ENST00000527027 TNNI1P19237 187 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 YWHAQP27348 245 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 DPP6P42658 865 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 TNNC1P63316 161 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 GAD2Q05329 585 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 IFRD2Q12894 506 aaPredicted RBP17.13■□□□□ 0.33
PTPRU-210ENST00000527027 SNRNP35Q16560 246 aaKnown RBP17.13■□□□□ 0.33
PTPRU-210ENST00000527027 WDR72Q3MJ13 1102 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 ARMCX6Q7L4S7 300 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 NUP93Q8N1F7 819 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 PGBD3Q8N328 593 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 PDZD8Q8NEN9 1154 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 KCNV2Q8TDN2 545 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 HMGB4Q8WW32 186 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 OTUB2Q96DC9 234 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 B3GNT5Q9BYG0 378 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 ZNF518BQ9C0D4 1074 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 DPEP3Q9H4B8 488 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 SLC32A1Q9H598 525 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 ATRXP46100 2492 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 GON4LQ3T8J9 2241 aa17.13■□□□□ 0.33
PTPRU-210ENST00000527027 KIAA1549LQ6ZVL6 1849 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 ZFYVE26Q68DK2 2539 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 TBC1D3BA6NDS4 549 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 RTN3O95197 1032 aaPredicted RBP17.12■□□□□ 0.33
PTPRU-210ENST00000527027 ENGP17813 658 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 KDSRQ06136 332 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 PREPLQ4J6C6 727 aaPredicted RBP17.12■□□□□ 0.33
PTPRU-210ENST00000527027 LYSMD4Q5XG99 296 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 SLC23A3Q6PIS1 610 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 PHTF2Q8N3S3 785 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 ZNF507Q8TCN5 953 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 OVCA2Q8WZ82 227 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 GATA6Q92908 595 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 FBXO32Q969P5 355 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 TNMDQ9H2S6 317 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 ZDHHC4Q9NPG8 344 aa17.12■□□□□ 0.33
PTPRU-210ENST00000527027 CHORDC1Q9UHD1 332 aaPredicted RBP17.12■□□□□ 0.33
PTPRU-210ENST00000527027 DMXL2Q8TDJ6 3036 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 TCRBV21S2A2A0A5A6 115 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 A8MXQ7 604 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 CLDN5O00501 218 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 EIF3DO15371 548 aaKnown RBP eCLIP17.11■□□□□ 0.33
PTPRU-210ENST00000527027 TGFB1I1O43294 461 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 COCHO43405 550 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 STAU1O95793 577 aaKnown RBP17.11■□□□□ 0.33
PTPRU-210ENST00000527027 SYT1P21579 422 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 HOXD12P35452 270 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 MAPK8P45983 427 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 PSMD6Q15008 389 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 HECTD3Q5T447 861 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 BTBD8Q5XKL5 378 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 NUDT18Q6ZVK8 323 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 EPM2AIP1Q7L775 607 aaPredicted RBP17.11■□□□□ 0.33
PTPRU-210ENST00000527027 TRMT11Q7Z4G4 463 aaKnown RBP17.11■□□□□ 0.33
PTPRU-210ENST00000527027 NAT16Q8N8M0 369 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 B3GALNT2Q8NCR0 500 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 CCDC127Q96BQ5 260 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 ZFRQ96KR1 1074 aaKnown RBP17.11■□□□□ 0.33
PTPRU-210ENST00000527027 USP28Q96RU2 1077 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 CGRRF1Q99675 332 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 TRIM9Q9C026 710 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 AGPAT3Q9NRZ7 376 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 PILRBQ9UKJ0 227 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 SH3BP1Q9Y3L3 701 aa17.11■□□□□ 0.33
PTPRU-210ENST00000527027 ASCC3Q8N3C0 2202 aaKnown RBP17.11■□□□□ 0.33
PTPRU-210ENST00000527027 DSPP15924 2871 aaKnown RBP17.11■□□□□ 0.33
PTPRU-210ENST00000527027 UPK3BL1B0FP48 263 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 UPK3BL2E5RIL1 263 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 ITPKAP23677 461 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 AMPD3Q01432 767 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 CYP24A1Q07973 514 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 TRPC3Q13507 836 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 SNX30Q5VWJ9 437 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 PEAR1Q5VY43 1037 aaPredicted RBP17.1■□□□□ 0.33
PTPRU-210ENST00000527027 PIP4P1Q86T03 277 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 ETFBKMTQ8IXQ9 262 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 ZNF513Q8N8E2 541 aaPredicted RBP17.1■□□□□ 0.33
PTPRU-210ENST00000527027 XXYLT1Q8NBI6 393 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 CEP76Q8TAP6 659 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 ZNF516Q92618 1163 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 KCNK16Q96T55 309 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 DUSP9Q99956 384 aaKnown RBP17.1■□□□□ 0.33
PTPRU-210ENST00000527027 KBTBD4Q9NVX7 518 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 DEC1Q9P2X7 70 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 NXF1Q9UBU9 619 aaKnown RBP17.1■□□□□ 0.33
PTPRU-210ENST00000527027 SLC6A14Q9UN76 642 aa17.1■□□□□ 0.33
PTPRU-210ENST00000527027 HELZP42694 1942 aaKnown RBP17.09■□□□□ 0.33
PTPRU-210ENST00000527027 CLIC2O15247 247 aa17.09■□□□□ 0.33
PTPRU-210ENST00000527027 HOXC11O43248 304 aaPredicted RBP17.09■□□□□ 0.33
PTPRU-210ENST00000527027 AP5Z1O43299 807 aa17.09■□□□□ 0.33
PTPRU-210ENST00000527027 TULP3O75386 442 aa17.09■□□□□ 0.33
PTPRU-210ENST00000527027 CFIP05156 583 aa17.09■□□□□ 0.33
PTPRU-210ENST00000527027 ATICP31939 592 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms