RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CEP68Q76N32 757 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 TMEM150AQ86TG1 271 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 UNC93AQ86WB7 457 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 SYNPOQ8N3V7 929 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 AOPEPQ8N6M6 819 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 MAB21L3Q8N8X9 362 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 MRPS31Q92665 395 aaKnown RBP10.76□□□□□ -0.69
VPS28-204ENST00000526054 ELMO3Q96BJ8 720 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 TNIP3Q96KP6 325 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 TUBGCP2Q9BSJ2 902 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 FAM124BQ9H5Z6 455 aaPredicted RBP10.76□□□□□ -0.69
VPS28-204ENST00000526054 TMLHEQ9NVH6 421 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 FANCLQ9NW38 375 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 C2orf42Q9NWW7 574 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 GCNT4Q9P109 453 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 CCL26Q9Y258 94 aa10.76□□□□□ -0.69
VPS28-204ENST00000526054 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.76□□□□□ -0.69
VPS28-204ENST00000526054 KIAA1549LQ6ZVL6 1849 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 PES1O00541 588 aaKnown RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 HRO43593 1189 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 F11P03951 625 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 PDGFRBP09619 1106 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 HMGA1P17096 107 aaKnown RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 CDK11BP21127 795 aaKnown RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 LMO2P25791 158 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 CDH8P55286 799 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 PSMC1P62191 440 aaKnown RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 RPL10AP62906 217 aaKnown RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 TPM4P67936 248 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 INCA1Q0VD86 236 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 GRSF1Q12849 480 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS28-204ENST00000526054 LRMPQ12912 555 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 CUL2Q13617 745 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 RUNX3Q13761 415 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 VWA3BQ502W6 1294 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 SDHAF4Q5VUM1 108 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 TXNDC8Q6A555 127 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 TRIM68Q6AZZ1 485 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 CC2D1AQ6P1N0 951 aaPredicted RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 GBP6Q6ZN66 633 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 SPATA2LQ8IUW3 424 aaPredicted RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 EHBP1Q8NDI1 1231 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 NETO1Q8TDF5 533 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 USP13Q92995 863 aaPredicted RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 FUBP3Q96I24 572 aaKnown RBP eCLIP10.75□□□□□ -0.69
VPS28-204ENST00000526054 FAM83CQ9BQN1 747 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 INTS2Q9H0H0 1204 aaKnown RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 SDCBP2Q9H190 292 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 NDST4Q9H3R1 872 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 EBF3Q9H4W6 596 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 ABCB6Q9NP58 842 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 HPS4Q9NQG7 708 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 GKN1Q9NS71 199 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 SEMA4GQ9NTN9 838 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 TDP1Q9NUW8 608 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 TAB2Q9NYJ8 693 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 UXTQ9UBK9 157 aaPredicted RBP10.75□□□□□ -0.69
VPS28-204ENST00000526054 GREB1Q4ZG55 1949 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 ATP8B3O60423 1300 aa10.75□□□□□ -0.69
VPS28-204ENST00000526054 SPAG17Q6Q759 2223 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 MYO16Q9Y6X6 1858 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 ANAPC1Q9H1A4 1944 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 CACNA1BQ00975 2339 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.74□□□□□ -0.69
VPS28-204ENST00000526054 DCDC2BA2VCK2 349 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 HCRTO43612 131 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 CILPO75339 1184 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 TADA3O75528 432 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 CD58P19256 250 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 HOXA6P31267 233 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 NDST1P52848 882 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 AMPD2Q01433 879 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 NCAPHQ15003 741 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 KRT31Q15323 416 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 CSRP2Q16527 193 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 DDR2Q16832 855 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 EXOC3L4Q17RC7 722 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 TMEM196Q5HYL7 178 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 MDH1BQ5I0G3 518 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 FSTL4Q6MZW2 842 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 FAM171BQ6P995 826 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 PRR23CQ6ZRP0 262 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 WDR5BQ86VZ2 330 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 PPM1KQ8N3J5 372 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 FAM160A2Q8N612 972 aaPredicted RBP10.74□□□□□ -0.69
VPS28-204ENST00000526054 B3GALNT2Q8NCR0 500 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 TTC16Q8NEE8 873 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 RIN3Q8TB24 985 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 MYCBPAPQ8TBZ2 947 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 TATDN2Q93075 761 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 MYLPFQ96A32 169 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 TRMT2BQ96GJ1 504 aaKnown RBP10.74□□□□□ -0.69
VPS28-204ENST00000526054 FAM81BQ96LP2 452 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 PKMYT1Q99640 499 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 NT5C1AQ9BXI3 368 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 TRPC7Q9HCX4 862 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 CRTAC1Q9NQ79 661 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 GTF3C4Q9UKN8 822 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 NME7Q9Y5B8 376 aa10.74□□□□□ -0.69
VPS28-204ENST00000526054 EML5Q05BV3 1969 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms