RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 SYNJ2BP-COX16A0A087WUM0 186 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ZNF840PA6NDX5 716 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 YJEFN3A6XGL0 299 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 E7ENQ6 273 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ZNF197O14709 1029 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 XPO1O14980 1071 aaKnown RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 PAPSS1O43252 624 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ATMINO43313 823 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 MSI1O43347 362 aaKnown RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 COCHO43405 550 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 CBFA2T2O43439 604 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 MED7O43513 233 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 RTN3O95197 1032 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ADCY5O95622 1261 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ZBED1O96006 694 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 C1RP00736 705 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 CKMP06732 381 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 SETSIPP0DME0 302 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 MBL2P11226 248 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 RARGP13631 454 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 HDCP19113 662 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 FCARP24071 287 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 CDC25CP30307 473 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 NUMBP49757 651 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 KIF11P52732 1056 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 EPHA5P54756 1037 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 SLC8A3P57103 927 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 RNASE9P60153 205 aaKnown RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 YWHAGP61981 247 aaKnown RBP eCLIP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 GPC5P78333 572 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 PITX1P78337 314 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 FMO1Q01740 532 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 TNK2Q07912 1038 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 KLHL30Q0D2K2 578 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 EFEMP1Q12805 493 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 PDCLQ13371 301 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 PUS10Q3MIT2 529 aaKnown RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 PTPN20Q4JDL3 420 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ARHGAP15Q53QZ3 475 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 RAB6CQ53S08 254 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 TDRD12Q587J7 1177 aaKnown RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 RAB41Q5JT25 222 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 C10orf120Q5SQS8 335 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 SFMBT2Q5VUG0 894 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 TRIM68Q6AZZ1 485 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 OR6B2Q6IFH4 312 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 VITQ6UXI7 678 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 MMS22LQ6ZRQ5 1243 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 FAM183BPQ6ZVS7 135 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 OTOP3Q7RTS5 596 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 BHLHA9Q7RTU4 235 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ZNF571Q7Z3V5 609 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 IRF2BP2Q7Z5L9 587 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 MIB1Q86YT6 1006 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 VSTM4Q8IW00 320 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 CMTM8Q8IZV2 173 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 GJD3Q8N144 294 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 SIX6OS1Q8N1H7 587 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 TTC39CQ8N584 583 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 OLIG1Q8TAK6 271 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ADAM32Q8TC27 787 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 MRPS31Q92665 395 aaKnown RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 USP13Q92995 863 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 FAM149B1Q96BN6 582 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ACSF2Q96CM8 615 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ASIC4Q96FT7 647 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 ASB16Q96NS5 453 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 NECTIN4Q96NY8 510 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 SLITRK1Q96PX8 696 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 AGPAT1Q99943 283 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 C11orf70Q9BRQ4 267 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 TTLL2Q9BWV7 592 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 COL25A1Q9BXS0 654 aaPredicted RBP4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 DNAI2Q9GZS0 605 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 NACA2Q9H009 215 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 RAB6CQ9H0N0 254 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 HAUS4Q9H6D7 363 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 TASP1Q9H6P5 420 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 SYNCQ9H7C4 482 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 KCNK12Q9HB15 430 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 TRPM5Q9NZQ8 1165 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 COX16Q9P0S2 106 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 HSFX1Q9UBD0 423 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 SFMBT1Q9UHJ3 866 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 RASAL2Q9UJF2 1139 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 KIAA1257Q9ULG3 409 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 MAFFQ9ULX9 164 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 FAM50BQ9Y247 325 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 NR2E1Q9Y466 385 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 CPQQ9Y646 472 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 WNT6Q9Y6F9 365 aa4.84□□□□□ -1.63
CHMP4A-202ENST00000524955 COL4A3Q01955 1670 aa4.83□□□□□ -1.64
CHMP4A-202ENST00000524955 TRAV19A0A0A6YYK7 116 aa4.83□□□□□ -1.64
CHMP4A-202ENST00000524955 FAM86C2PA6NEL3 165 aa4.83□□□□□ -1.64
CHMP4A-202ENST00000524955 C19orf67A6NJJ6 358 aa4.83□□□□□ -1.64
CHMP4A-202ENST00000524955 HEPACAM2A8MVW5 462 aa4.83□□□□□ -1.64
CHMP4A-202ENST00000524955 DDX3XO00571 662 aaKnown RBP eCLIP4.83□□□□□ -1.64
CHMP4A-202ENST00000524955 DPYSL4O14531 572 aa4.83□□□□□ -1.64
CHMP4A-202ENST00000524955 TRDMT1O14717 391 aaKnown RBP4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms