RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 RBM12Q9NTZ6 932 aaKnown RBP22.1■■□□□ 1.13
VPS28-203ENST00000524521 FAM92AA1XBS5 289 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 HHLA1C9JL84 531 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 PMM2O15305 246 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 OLFM2O95897 454 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 ACO1P21399 889 aaKnown RBP22.09■■□□□ 1.13
VPS28-203ENST00000524521 YWHAEP62258 255 aaKnown RBP22.09■■□□□ 1.13
VPS28-203ENST00000524521 KCNH2Q12809 1159 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 LRRC32Q14392 662 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 SNX30Q5VWJ9 437 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 CLEC17AQ6ZS10 378 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 GPRIN1Q7Z2K8 1008 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 TRIM59Q8IWR1 403 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 CPA6Q8N4T0 437 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 ATP2A3Q93084 1043 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 DUSP16Q9BY84 665 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 ECT2Q9H8V3 914 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 RWDD2AQ9UIY3 292 aa22.09■■□□□ 1.13
VPS28-203ENST00000524521 PROB1E7EW31 1015 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 COCHO43405 550 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 CCDC192P0DO97 292 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 TBXAS1P24557 533 aaPredicted RBP22.08■■□□□ 1.13
VPS28-203ENST00000524521 AMPD2Q01433 879 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 EML3Q32P44 896 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 DGKKQ5KSL6 1271 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 CREBRFQ8IUR6 639 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 NT5C1BQ96P26 610 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 CCSER2Q9H7U1 834 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 TLR8Q9NR97 1041 aaKnown RBP22.08■■□□□ 1.13
VPS28-203ENST00000524521 CFAP97Q9P2B7 532 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 FBXO4Q9UKT5 387 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.08■■□□□ 1.13
VPS28-203ENST00000524521 R4GN57 208 aa22.08■■□□□ 1.13
VPS28-203ENST00000524521 P4HA2O15460 535 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 ZDHHC11BP0C7U3 371 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 PGFP49763 221 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 MARSP56192 900 aaKnown RBP22.07■■□□□ 1.12
VPS28-203ENST00000524521 NR1H3Q13133 447 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 MLKLQ8NB16 471 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 NACA2Q9H009 215 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 PNPLA8Q9NP80 782 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 LMBRD1Q9NUN5 540 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 SCML2Q9UQR0 700 aa22.07■■□□□ 1.12
VPS28-203ENST00000524521 HELZP42694 1942 aaKnown RBP22.06■■□□□ 1.12
VPS28-203ENST00000524521 PIEZO1Q92508 2521 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 AFPP02771 609 aaKnown RBP22.06■■□□□ 1.12
VPS28-203ENST00000524521 CD19P15391 556 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 GJA4P35212 333 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 ARHGAP17Q68EM7 881 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 TSSK4Q6SA08 328 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 DDX42Q86XP3 938 aaKnown RBP eCLIP22.06■■□□□ 1.12
VPS28-203ENST00000524521 PPM1KQ8N3J5 372 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 EHBP1Q8NDI1 1231 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 LMO3Q8TAP4 145 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 NKD2Q969F2 451 aaPredicted RBP22.06■■□□□ 1.12
VPS28-203ENST00000524521 IER2Q9BTL4 223 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 NUP62CLQ9H1M0 184 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 PATJQ8NI35 1801 aa22.06■■□□□ 1.12
VPS28-203ENST00000524521 TRDMT1O14717 391 aaKnown RBP22.05■■□□□ 1.12
VPS28-203ENST00000524521 SCAMP3O14828 347 aaKnown RBP22.05■■□□□ 1.12
VPS28-203ENST00000524521 CYP26A1O43174 497 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 GFRA3O60609 400 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 NFATC1O95644 943 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 TUBP50607 506 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 GALK1P51570 392 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 KIF11P52732 1056 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 GRSF1Q12849 480 aaKnown RBP eCLIP22.05■■□□□ 1.12
VPS28-203ENST00000524521 GAS6Q14393 721 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 ZNF528Q3MIS6 628 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 SGO2Q562F6 1265 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 ANKRD52Q8NB46 1076 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 CHFRQ96EP1 664 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 MED15Q96RN5 788 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 PCDHB4Q9Y5E5 795 aa22.05■■□□□ 1.12
VPS28-203ENST00000524521 SLC9A3R1O14745 358 aaPredicted RBP22.04■■□□□ 1.12
VPS28-203ENST00000524521 TLR5O60602 858 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 SLC8A3P57103 927 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 CCINQ13939 588 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 TPD52L1Q16890 204 aaPredicted RBP22.04■■□□□ 1.12
VPS28-203ENST00000524521 TMEM196Q5HYL7 178 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 ZC3H14Q6PJT7 736 aaKnown RBP22.04■■□□□ 1.12
VPS28-203ENST00000524521 TMEM270Q6UE05 265 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 MAMSTRQ6ZN01 415 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 Q6ZS52 159 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 RRAGAQ7L523 313 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 ADGRG2Q8IZP9 1017 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 SPEM1Q8N4L4 309 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 UBR7Q8N806 425 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 EXOC4Q96A65 974 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 P2RY13Q9BPV8 354 aa22.04■■□□□ 1.12
VPS28-203ENST00000524521 FBRSL1Q9HCM7 1045 aaKnown RBP22.04■■□□□ 1.12
VPS28-203ENST00000524521 A0A1W2PQH9 124 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 TBX18O95935 607 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 VDRP11473 427 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 CXCL12P48061 93 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 CCR3P51677 355 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 GOLGA7BQ2TAP0 167 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 NAIF1Q69YI7 327 aaPredicted RBP22.03■■□□□ 1.12
VPS28-203ENST00000524521 FSTL4Q6MZW2 842 aa22.03■■□□□ 1.12
VPS28-203ENST00000524521 ASCL5Q7RTU5 278 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms