RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 SDR42E2A6NKP2 422 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 DNALI1O14645 258 aaPredicted RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 PPP1R11O60927 126 aaPredicted RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 NCAM1P13591 858 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 TGM2P21980 687 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 RPS12P25398 132 aaKnown RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 VCPP55072 806 aaKnown RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 LAMC2Q13753 1193 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 PCSK7Q16549 785 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 NOTUMQ6P988 496 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 ZCCHC9Q8N567 271 aaKnown RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 INPP5DQ92835 1189 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 RUBCNLQ9H714 662 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 CATSPERBQ9H7T0 1116 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 ERVK-5Q9HDB9 667 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 DCDC2Q9UHG0 476 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 USP18Q9UMW8 372 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 NDUFS3O75489 264 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 CALB2P22676 271 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 PNPLA4P41247 253 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 TAF6P49848 677 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 FLOT2Q14254 428 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 EMC1Q8N766 993 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 AGAP11Q8TF27 550 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 ZNF606Q8WXB4 792 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 AFF4Q9UHB7 1163 aaKnown RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 TMEM59LQ9UK28 342 aa14.31□□□□□ -0.12
SYNPO-205ENST00000522122 UBQLN1Q9UMX0 589 aaKnown RBP14.31□□□□□ -0.12
SYNPO-205ENST00000522122 SLIT2O94813 1529 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 TGFB1I1O43294 461 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 SRP72O76094 671 aaKnown RBP14.3□□□□□ -0.12
SYNPO-205ENST00000522122 FAM200BP0CF97 657 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 CLK2P49760 499 aaKnown RBP14.3□□□□□ -0.12
SYNPO-205ENST00000522122 RAD51Q06609 339 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 WDR49Q8IV35 697 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 SHCBP1Q8NEM2 672 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 RNF217Q8TC41 542 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 GFM2Q969S9 779 aaKnown RBP14.3□□□□□ -0.12
SYNPO-205ENST00000522122 MIEF2Q96C03 454 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 VCPIP1Q96JH7 1222 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 KIF17Q9P2E2 1029 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 hCG_2014768A0A024R1R8 64 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 ZBTB39O15060 712 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 PSMD10O75832 226 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 NPTXRO95502 500 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 ESRRBO95718 433 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 ABHD2P08910 425 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 TMEM109Q9BVC6 243 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 PXMP2Q9NR77 195 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 CTNNAL1Q9UBT7 734 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 SIPA1L3O60292 1781 aaPredicted RBP14.3□□□□□ -0.12
SYNPO-205ENST00000522122 M0QYT0 321 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 MYO1DO94832 1006 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 TAL1P17542 331 aaPredicted RBP14.3□□□□□ -0.12
SYNPO-205ENST00000522122 MARCKSL1P49006 195 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 MFSD5Q6N075 450 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 LINC00523Q86TU6 105 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 ACOT1Q86TX2 421 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 SH3TC2Q8TF17 1288 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 CHST7Q9NS84 486 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.3□□□□□ -0.12
SYNPO-205ENST00000522122 MAGEA13PA6NCF6 341 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 DLG4P78352 724 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 KPNB1Q14974 876 aaKnown RBP14.3□□□□□ -0.12
SYNPO-205ENST00000522122 EP400NLQ6ZTU2 488 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 FAM172AQ8WUF8 416 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 PDP2Q9P2J9 529 aa14.3□□□□□ -0.12
SYNPO-205ENST00000522122 TJP1Q07157 1748 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 NUDT2P50583 147 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 CLCN3P51790 818 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 BACE1P56817 501 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 PTPN11Q06124 597 aaPredicted RBP14.29□□□□□ -0.12
SYNPO-205ENST00000522122 RIPK1Q13546 671 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 EXOC3L1Q86VI1 746 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SCUBE1Q8IWY4 988 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 FAM71AQ8IYT1 594 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 PRCCQ92733 491 aaPredicted RBP14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SCHIP1Q9P0W5 487 aaPredicted RBP14.29□□□□□ -0.12
SYNPO-205ENST00000522122 VAV3Q9UKW4 847 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 ADGRA3Q8IWK6 1321 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 ALS2Q96Q42 1657 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 RRN3P2A6NIE6 340 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 ZNF197O14709 1029 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 WFS1O76024 890 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 NCALDP61601 193 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 STX5Q13190 355 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 DENND5BQ6ZUT9 1274 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SLC25A41Q8N5S1 370 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SPIRE2Q8WWL2 714 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SGF29Q96ES7 293 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 DTNBP1Q96EV8 351 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 ADNPQ9H2P0 1102 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 CASS4Q9NQ75 786 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 GPATCH2LQ9NWQ4 482 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 DDIT4Q9NX09 232 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 ABT1Q9ULW3 272 aaKnown RBP14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SYNPO2Q9UMS6 1093 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 PCDHGB4Q9UN71 923 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 SPATA31A6Q5VVP1 1343 aa14.29□□□□□ -0.12
SYNPO-205ENST00000522122 MYH6P13533 1939 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms