RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 PTPN20Q4JDL3 420 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 CYP4A22Q5TCH4 519 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 PMF1Q6P1K2 205 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 TRIM72Q6ZMU5 477 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 DENND5BQ6ZUT9 1274 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 PDZD4Q76G19 769 aaPredicted RBP16.15■□□□□ 0.18
LSM1-203ENST00000520755 GET4Q7L5D6 327 aaPredicted RBP16.15■□□□□ 0.18
LSM1-203ENST00000520755 GPRIN1Q7Z2K8 1008 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.15■□□□□ 0.18
LSM1-203ENST00000520755 SPATA17Q96L03 361 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 ASB2Q96Q27 587 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 ZNF334Q9HCZ1 680 aaPredicted RBP16.15■□□□□ 0.18
LSM1-203ENST00000520755 NAGPAQ9UK23 515 aa16.15■□□□□ 0.18
LSM1-203ENST00000520755 HELZP42694 1942 aaKnown RBP16.15■□□□□ 0.18
LSM1-203ENST00000520755 UNC80Q8N2C7 3258 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 XPO1O14980 1071 aaKnown RBP16.14■□□□□ 0.17
LSM1-203ENST00000520755 AKR1B10O60218 316 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 NDUFA10O95299 355 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 HMGA1P17096 107 aaKnown RBP16.14■□□□□ 0.17
LSM1-203ENST00000520755 RPL34P49207 117 aaKnown RBP16.14■□□□□ 0.17
LSM1-203ENST00000520755 RGS7P49802 495 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 SLC8A3P57103 927 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 PTP4A2Q12974 167 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 SLC5A9Q2M3M2 681 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 TOGARAM2Q6ZUX3 1019 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 MON1BQ7L1V2 547 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 PIGZQ86VD9 579 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 TMC8Q8IU68 726 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 CCDC170Q8IYT3 715 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 NUP93Q8N1F7 819 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 TMEM35BQ8NCS4 154 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 CPA5Q8WXQ8 436 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 CCDC42Q96M95 316 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 CPXM1Q96SM3 734 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.14■□□□□ 0.17
LSM1-203ENST00000520755 LRRC3Q9BY71 257 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 DEF6Q9H4E7 631 aa16.14■□□□□ 0.17
LSM1-203ENST00000520755 MRPS23Q9Y3D9 190 aaKnown RBP16.14■□□□□ 0.17
LSM1-203ENST00000520755 TMCO5BA8MYB1 307 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 EIF3CLB5ME19 914 aaKnown RBP16.13■□□□□ 0.17
LSM1-203ENST00000520755 TNFRSF10BO14763 440 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 ARHGAP6O43182 974 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 GJA1P17302 382 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 GABRR2P28476 465 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 CCR2P41597 374 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 SLC5A3P53794 718 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 EPHA5P54756 1037 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 USP46P62068 366 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 C2CD6Q53TS8 623 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 VPS36Q86VN1 386 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 LEMD2Q8NC56 503 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 ACRBPQ8NEB7 543 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 ITFG1Q8TB96 612 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 ING5Q8WYH8 240 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 TCEAL4Q96EI5 215 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 CEP295NLQ96MC4 621 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 EIF3CQ99613 913 aaKnown RBP16.13■□□□□ 0.17
LSM1-203ENST00000520755 DESI2Q9BSY9 194 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 SLC4A5Q9BY07 1137 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 PACSIN1Q9BY11 444 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 ISCUQ9H1K1 167 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 PDCL3Q9H2J4 239 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 EPN1Q9Y6I3 576 aaPredicted RBP16.13■□□□□ 0.17
LSM1-203ENST00000520755 DOCK8Q8NF50 2099 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 NCANO14594 1321 aa16.13■□□□□ 0.17
LSM1-203ENST00000520755 A0A1W2PRU2 124 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 E5RJQ4 531 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 ZNF197O14709 1029 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 ERBB2P04626 1255 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 GZMAP12544 262 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 MMP8P22894 467 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 GBP2P32456 591 aaPredicted RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 CYLC1P35663 651 aaPredicted RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 RAB41Q5JT25 222 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 PRSS36Q5K4E3 855 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 ACAD10Q6JQN1 1059 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 ALKBH5Q6P6C2 394 aaKnown RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 MMS22LQ6ZRQ5 1243 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 PHF13Q86YI8 300 aaPredicted RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 SCAMP5Q8TAC9 235 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 STK32AQ8WU08 396 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 TRMT2BQ96GJ1 504 aaKnown RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 RPGRIP1Q96KN7 1286 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 GCNAQ96QF7 691 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 C11orf70Q9BRQ4 267 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 PHF7Q9BWX1 381 aaPredicted RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 ATXN3LQ9H3M9 355 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 IL21Q9HBE4 155 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 PNPLA8Q9NP80 782 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 AVENQ9NQS1 362 aaPredicted RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 EHD2Q9NZN4 543 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 UXTQ9UBK9 157 aaPredicted RBP16.12■□□□□ 0.17
LSM1-203ENST00000520755 CEP83Q9Y592 693 aa16.12■□□□□ 0.17
LSM1-203ENST00000520755 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.12■□□□□ 0.17
LSM1-203ENST00000520755 A0A0U1RQJ8 604 aa16.11■□□□□ 0.17
LSM1-203ENST00000520755 PIK3R2O00459 728 aa16.11■□□□□ 0.17
LSM1-203ENST00000520755 NRG2O14511 850 aaPredicted RBP16.11■□□□□ 0.17
LSM1-203ENST00000520755 RTN2O75298 545 aa16.11■□□□□ 0.17
LSM1-203ENST00000520755 RTN3O95197 1032 aaPredicted RBP16.11■□□□□ 0.17
LSM1-203ENST00000520755 FGF19O95750 216 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms