RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 CASS4Q9NQ75 786 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 PCMTD2Q9NV79 361 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 PSMC3IPQ9P2W1 217 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 CTNNAL1Q9UBT7 734 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 TAF6LQ9Y6J9 622 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ITIH6Q6UXX5 1313 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 CEP170BQ9Y4F5 1589 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 TRIM43BA6NCK2 446 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 H7C1W4 665 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 SMNDC1O75940 238 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 MYO1DO94832 1006 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 UCHL3P15374 230 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 RPL5P46777 297 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 RAB25P57735 213 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 NEDD8Q15843 81 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 MIGA2Q7L4E1 593 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 LRRC6Q86X45 466 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 BEST2Q8NFU1 509 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM162AQ96A26 154 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 DDX50Q9BQ39 737 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 GRIP2Q9C0E4 1043 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 VTA1Q9NP79 307 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 CLIC5Q9NZA1 410 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 GPC6Q9Y625 555 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 COL15A1P39059 1388 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ZW10O43264 779 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 SPAG6O75602 509 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 IL12AP29459 219 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 RAD23AP54725 363 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 RHAGQ02094 409 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 AP3B2Q13367 1082 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ACAP2Q15057 778 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 PTPAQ15257 358 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF280DQ6N043 979 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ILDR1Q86SU0 546 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 FAM172AQ8WUF8 416 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ANKS1AQ92625 1134 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 MARCH7Q9H992 704 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 ING3Q9NXR8 418 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 HEY2Q9UBP5 337 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 CDY2AQ9Y6F7 541 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 CDY1Q9Y6F8 540 aa9.02□□□□□ -0.97
LIMCH1-218ENST00000513024 PEX14O75381 377 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 TOP3BO95985 862 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 CDC25CP30307 473 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 EIF2S3P41091 472 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 NUDT2P50583 147 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 DPYDQ12882 1025 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 C1DQ13901 141 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 RIBC1Q8N443 379 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 TTC29Q8NA56 475 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 SH3RF3Q8TEJ3 882 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF668Q96K58 619 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ELOVL6Q9H5J4 265 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MANSC1Q9H8J5 431 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 RAB6BQ9NRW1 208 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ZC3H7BQ9UGR2 993 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 GGA2Q9UJY4 613 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 CDHR2Q9BYE9 1310 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 UBA6A0AVT1 1052 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ABLIM1O14639 778 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 RTN2O75298 545 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 NMT1P30419 496 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 SFNP31947 248 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MAGEA2P43356 314 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 MAGEA4P43358 317 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 PRELPP51888 382 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 KCNQ4P56696 695 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 RAD51Q06609 339 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ZFP69Q49AA0 526 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ARHGAP15Q53QZ3 475 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 C3orf62Q6ZUJ4 267 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 STK32CQ86UX6 486 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ARID3BQ8IVW6 561 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 EFHBQ8N7U6 833 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 AGAP3Q96P47 875 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 EGFL8Q99944 293 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 BARHL2Q9NY43 387 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 HSPBP1Q9NZL4 362 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 CHORDC1Q9UHD1 332 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 AK5Q9Y6K8 562 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ADAMTS13Q76LX8 1427 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 PXDNLA1KZ92 1463 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 NPHP3-ACAD11A0A0J9YXS1 232 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 NOTOA8MTQ0 251 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 HOXC6P09630 235 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 DPEP1P16444 411 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 CACNB3P54284 484 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF284Q2VY69 593 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 KIAA0408Q6ZU52 694 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 KDELC2Q7Z4H8 507 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 FRMD5Q7Z6J6 570 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 SGMS1Q86VZ5 419 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 SCAIQ8N9R8 606 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 GPRC5AQ8NFJ5 357 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 S100ZQ8WXG8 99 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 ZNF285Q96NJ3 590 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 PLEKHG4BQ96PX9 1271 aa9.01□□□□□ -0.97
LIMCH1-218ENST00000513024 NUAK2Q9H093 628 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms