RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 ALPPL2P10696 532 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 SLC2A4P14672 509 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 UCHL3P15374 230 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 EIF4BP23588 611 aaKnown RBP4.4□□□□□ -1.7
VCAN-209ENST00000513016 GTF2E2P29084 291 aaKnown RBP4.4□□□□□ -1.7
VCAN-209ENST00000513016 MAP2K2P36507 400 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 POU4F1Q01851 419 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 PSMD5Q16401 504 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 FAM83EQ2M2I3 478 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 ZC2HC1CQ53FD0 456 aaPredicted RBP4.4□□□□□ -1.7
VCAN-209ENST00000513016 APOBEC3HQ6NTF7 200 aaKnown RBP4.4□□□□□ -1.7
VCAN-209ENST00000513016 PALB2Q86YC2 1186 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 ZBED8Q8IZ13 594 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 WDR48Q8TAF3 677 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.4□□□□□ -1.7
VCAN-209ENST00000513016 PIK3R5Q8WYR1 880 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 PHF21AQ96BD5 680 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 C11orf84Q9BUA3 381 aaPredicted RBP4.4□□□□□ -1.7
VCAN-209ENST00000513016 ZNF556Q9HAH1 456 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 ABCC13Q9NSE7 274 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 CACNA2D2Q9NY47 1150 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 NDOR1Q9UHB4 597 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 DNMT3LQ9UJW3 386 aa4.4□□□□□ -1.7
VCAN-209ENST00000513016 EIF3LQ9Y262 564 aaKnown RBP4.4□□□□□ -1.7
VCAN-209ENST00000513016 SYCE1LA8MT33 242 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 KPNA3O00505 521 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 ZSCAN9O15535 394 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 NFATC1O95644 943 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 GUCA1CO95843 209 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 DNTTP04053 509 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SERPINA4P29622 427 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 GPC1P35052 558 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 CLK3P49761 638 aaKnown RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 SNRPD1P62314 119 aaKnown RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 DAB2P98082 770 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 ACOX1Q15067 660 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 AGAP9Q5VTM2 703 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 UNC93AQ86WB7 457 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 MKL1Q969V6 931 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 C18orf25Q96B23 403 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 CORO1BQ9BR76 489 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 APOL5Q9BWW9 433 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 PITPNM3Q9BZ71 974 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 CDH9Q9ULB4 789 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 MADDQ8WXG6 1647 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 F5H423 210 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 GCATO75600 419 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 HDCP19113 662 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SLC8A1P32418 973 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SLCO1A2P46721 670 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SERPINB4P48594 390 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 GLUD2P49448 558 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 PTPN11Q06124 597 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 LRRC74AQ0VAA2 488 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SLC18A3Q16572 532 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SLC39A12Q504Y0 691 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 CENPPQ6IPU0 288 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 FAM43BQ6ZT52 329 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 USP45Q70EL2 814 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 RD3Q7Z3Z2 195 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 CDR2LQ86X02 465 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 ABRAQ8N0Z2 381 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SYN2Q92777 582 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 MAGEB10Q96LZ2 347 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 PANX3Q96QZ0 392 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 OSBPL8Q9BZF1 889 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 MTMR12Q9C0I1 747 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 MIR1-1HGQ9H1L0 117 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 ZC3H7BQ9UGR2 993 aaKnown RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 LRRC7Q96NW7 1537 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 MEGF6O75095 1541 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 F8W810 466 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 ANGPT2O15123 496 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SOAT1P35610 550 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SULT2A1Q06520 285 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 XRCC4Q13426 336 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SYCP2LQ5T4T6 812 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 MARC1Q5VT66 337 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 ILDR1Q86SU0 546 aaPredicted RBP4.4□□□□□ -1.71
VCAN-209ENST00000513016 ZNF248Q8NDW4 579 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 BLOC1S5Q8TDH9 187 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 RUBCNQ92622 972 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 GRAMD1AQ96CP6 724 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 RBBP8Q99708 897 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 GPR88Q9GZN0 384 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 GJB4Q9NTQ9 266 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 TMEM161AQ9NX61 479 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 SEPT3Q9UH03 358 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 STARD13Q9Y3M8 1113 aa4.4□□□□□ -1.71
VCAN-209ENST00000513016 LRRIQ1Q96JM4 1722 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 ZSCAN5CA6NGD5 496 aaPredicted RBP4.39□□□□□ -1.71
VCAN-209ENST00000513016 PLA2G6O60733 806 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 GRAP2O75791 330 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 IL10P22301 178 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 PLA2G4AP47712 749 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 GABPB1Q06547 395 aaPredicted RBP4.39□□□□□ -1.71
VCAN-209ENST00000513016 TROAPQ12815 778 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 SLC30A10Q6XR72 485 aa4.39□□□□□ -1.71
VCAN-209ENST00000513016 PCYOX1LQ8NBM8 494 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms