RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 UBDO15205 165 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 SERPINE1P05121 402 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 FDX1P10109 184 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ACADLP28330 430 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 VAC14Q08AM6 782 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 NAB1Q13506 487 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ZFP69Q49AA0 526 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 RAD9BQ6WBX8 426 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 MS4A14Q96JA4 679 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 CHP1Q99653 195 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 OSBPL11Q9BXB4 747 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 LRMDAQ9H2I8 198 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 THAP1Q9NVV9 213 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF221Q9UK13 617 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 MDM4O15151 490 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 GNPATO15228 680 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 PPP2R1BP30154 601 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 PTGER2P43116 358 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 RPS7P62081 194 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ALX1Q15699 326 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF284Q2VY69 593 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 MACC1Q6ZN28 852 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 FOXP4Q8IVH2 680 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 DEPDC4Q8N2C3 294 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 CASKIN2Q8WXE0 1202 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 PRDM8Q9NQV8 689 aa11.59□□□□□ -0.55
LIMCH1-217ENST00000512946 EMSYQ7Z589 1322 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 RAG1P15918 1043 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 ADSLP30566 484 aaPredicted RBP11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 GTF2IP78347 998 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 NUDT18Q6ZVK8 323 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 ATPAF2Q8N5M1 289 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 TCF7L2Q9NQB0 619 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 KCNK4Q9NYG8 393 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 FBXO40Q9UH90 709 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 DNAJC16Q9Y2G8 782 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 SPACA6W5XKT8 324 aa11.58□□□□□ -0.55
LIMCH1-217ENST00000512946 CDK13Q14004 1512 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 A0A0B4J269 797 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 TMEM114B3SHH9 223 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 MPOP05164 745 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 CYP2E1P05181 493 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 ALADP13716 330 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 PTGS2P35354 604 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 CDC42EP1Q00587 391 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 TUBB3Q13509 450 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 FASTKD5Q7L8L6 764 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 ZNF589Q86UQ0 364 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 PPP1R14AQ96A00 147 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 KATNAL1Q9BW62 490 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 RACGAP1Q9H0H5 632 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 CATSPERBQ9H7T0 1116 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 IL1RL2Q9HB29 575 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 C3orf18Q9UK00 162 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 THOC2Q8NI27 1593 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 A0A0X1KG70 313 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 LARGE1O95461 756 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 EYA4O95677 639 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 PTPN7P35236 360 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 FAUP35544 74 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 RABL6Q3YEC7 729 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 ANKRD40Q6AI12 368 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 PTRHD1Q6GMV3 140 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 FAM180AQ6UWF9 173 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 CATSPER4Q7RTX7 472 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 PLEKHG4BQ96PX9 1271 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 RHOBTB2Q9BYZ6 727 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 GPN1Q9HCN4 374 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 AFF4Q9UHB7 1163 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 UHRF1BP1LA0JNW5 1464 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 FAM92AA1XBS5 289 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 FCHO1O14526 889 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 SERPINA1P01009 418 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 APOC1P02654 83 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 GTF2H1P32780 548 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 CBX3Q13185 183 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 RIPK1Q13546 671 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 BTBD8Q5XKL5 378 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 SNRNP48Q6IEG0 339 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 TDRD5Q8NAT2 981 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 EZH1Q92800 747 aaPredicted RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 SGF29Q96ES7 293 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 STN1Q9H668 368 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 ENTPD7Q9NQZ7 604 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 ATPIF1Q9UII2 106 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 ACTL7BQ9Y614 415 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 IRAK3Q9Y616 596 aa11.58□□□□□ -0.56
LIMCH1-217ENST00000512946 SSNA1O43805 119 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 CNPP09543 421 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PDGFRBP09619 1106 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 CPA3P15088 417 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 DNAJB2P25686 324 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SOAT1P35610 550 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 UXS1Q8NBZ7 420 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SPATA18Q8TC71 538 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 LRRC40Q9H9A6 602 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ADPRHL2Q9NX46 363 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 ARHGAP28Q9P2N2 729 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 SPASTQ9UBP0 616 aa11.57□□□□□ -0.56
LIMCH1-217ENST00000512946 PLAGL2Q9UPG8 496 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms