RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 RPS6KL1Q9Y6S9 549 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 MYH2Q9UKX2 1941 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 KRT36O76013 467 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 WFS1O76024 890 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 TCN1P20061 433 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 FDFT1P37268 417 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 BACE1P56817 501 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 TPI1P60174 286 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 METTL23Q86XA0 190 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 CCDC60Q8IWA6 550 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ZC3H3Q8IXZ2 948 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ZSWIM2Q8NEG5 633 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 CHST13Q8NET6 341 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 DTNBP1Q96EV8 351 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 MMP19Q99542 508 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 C20orf96Q9NUD7 363 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 POLIQ9UNA4 740 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ZMYM2Q9UBW7 1377 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 LYPLA2O95372 231 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 NUDT2P50583 147 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 CDH8P55286 799 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC1A5Q15758 541 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 VSTM1Q6UX27 236 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 EME1Q96AY2 570 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ACSS3Q9H6R3 686 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF212Q9UDV6 495 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 LGALS13Q9UHV8 139 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 VWA5AO00534 786 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 RALBP11234 206 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ATP6V1C1P21283 382 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 FLOT2Q14254 428 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 EMC10Q5UCC4 262 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 LRRC8EQ6NSJ5 796 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ZCCHC23Q6ZST2 131 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 FAM83AQ86UY5 434 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 APBB2Q92870 758 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 TNIP3Q96KP6 325 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 ZNF184Q99676 751 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 KCNK4Q9NYG8 393 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 CORO1CQ9ULV4 474 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 SOX13Q9UN79 622 aa8.72□□□□□ -1.01
LIMCH1-216ENST00000512820 MEI4A8MW99 385 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 EEF2KO00418 725 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 GAS2O43903 313 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 SETSIPP0DME0 302 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 CXCL8P10145 99 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 CLCN3P51790 818 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 MAPRE2Q15555 327 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 DCAF6Q58WW2 860 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 DENND1BQ6P3S1 775 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 ACOT1Q86TX2 421 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 CYP4X1Q8N118 509 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 OR5B17Q8NGF7 314 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 ASAP3Q8TDY4 903 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 MRPL1Q9BYD6 325 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 SIK2Q9H0K1 926 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 THAP1Q9NVV9 213 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 SLC39A10Q9ULF5 831 aa8.71□□□□□ -1.01
LIMCH1-216ENST00000512820 MROH7Q68CQ1 1323 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PFDN6O15212 129 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PRPF4O43172 522 aaKnown RBP eCLIP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 HBP1O60381 514 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 CNTFP26441 200 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 LAMTOR4Q0VGL1 99 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC12A1Q13621 1099 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ACVR2BQ13705 512 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 N4BP2L1Q5TBK1 243 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ZPBP2Q6X784 338 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 SAMD7Q7Z3H4 446 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 VSIG10LQ86VR7 867 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 POU5F2Q8N7G0 328 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 HIC2Q96JB3 615 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 KLHL4Q9C0H6 718 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 DPP3Q9NY33 737 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 SLC17A7Q9P2U7 560 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 CDYLQ9Y232 598 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 SIGLEC16A6NMB1 481 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 NPM3O75607 178 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 APOEP02649 317 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ATP6V1B1P15313 513 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 KCNA4P22459 653 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 GRK2P25098 689 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PMLP29590 882 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ECHS1P30084 290 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 SERPINB5P36952 375 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 PHEXP78562 749 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 FASTKD3Q14CZ7 662 aaKnown RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 WLSQ5T9L3 541 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 LRRC43Q8N309 656 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF526Q8TF50 670 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 RNF139Q8WU17 664 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 OTUD5Q96G74 571 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ZNF560Q96MR9 790 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 ILKAPQ9H0C8 392 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 CCDC134Q9H6E4 229 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 FBXO6Q9NRD1 293 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 WRAP73Q9P2S5 460 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 KIAA1257Q9ULG3 409 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 TMEM191CA6NGB0 347 aa8.71□□□□□ -1.02
LIMCH1-216ENST00000512820 C3orf70A6NLC5 250 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms