RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 DDX56Q9NY93 547 aaKnown RBP16.82■□□□□ 0.28
SQSTM1-213ENST00000510187 EURLQ9NYK6 297 aa16.82■□□□□ 0.28
SQSTM1-213ENST00000510187 DRG1Q9Y295 367 aaKnown RBP16.82■□□□□ 0.28
SQSTM1-213ENST00000510187 ANK1P16157 1881 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 CITO14578 2027 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 SMIM28A0A1B0GU29 152 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 C9IYK1 514 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 DNALI1O14645 258 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 KIAA0355O15063 1070 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 SUN1O94901 812 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 TIMP1P01033 207 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 CST3P01034 146 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 KRT19P08727 400 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 BRAFP15056 766 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 RAG1P15918 1043 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 ATF7P17544 494 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 CD58P19256 250 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 CDH5P33151 784 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 MLH1P40692 756 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 PIGHQ14442 188 aaPredicted RBP16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 SNCBQ16143 134 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 SCARA3Q6AZY7 606 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 DNAJC24Q6P3W2 148 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 GSTA5Q7RTV2 222 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 C1orf127Q8N9H9 656 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 TMEM35BQ8NCS4 154 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 ZFP42Q96MM3 310 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 GAD1Q99259 594 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 DPP3Q9NY33 737 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 USTQ9Y2C2 406 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 GIT1Q9Y2X7 761 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 TANC1Q9C0D5 1861 aa16.81■□□□□ 0.28
SQSTM1-213ENST00000510187 KRT1P04264 644 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 ITGB3P05106 788 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 KCNE1P15382 129 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 ITGB8P26012 769 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 RFC2P35250 354 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 SSR1P43307 286 aaKnown RBP16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 MAGEA4P43358 317 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 VPS41P49754 854 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 ZBTB6Q15916 424 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 FAM43BQ6ZT52 329 aaPredicted RBP16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 TMEM130Q8N3G9 435 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 ALLCQ8N6M5 410 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 BEST2Q8NFU1 509 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 MAGEB18Q96M61 343 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 TSPAN18Q96SJ8 248 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 FRMD8P1Q9BZ68 369 aaPredicted RBP16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 PHACTR1Q9C0D0 580 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 NIF3L1Q9GZT8 377 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 RSAD1Q9HA92 442 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 NKIRAS1Q9NYS0 192 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 PCDHGC3Q9UN70 934 aa16.8■□□□□ 0.28
SQSTM1-213ENST00000510187 ARL5CA6NH57 179 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 TCP11X1B4DZS4 312 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 ENPP3O14638 875 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 SLC18A1P54219 525 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 MYL6P60660 151 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 MORF4L2Q15014 288 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 RASA2Q15283 850 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 TCTN1Q2MV58 587 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 P3H1Q32P28 736 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 DAB2IPQ5VWQ8 1189 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 SPOCD1Q6ZMY3 1216 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 ANKS1BQ7Z6G8 1248 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 ZNF598Q86UK7 904 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 NKD2Q969F2 451 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 C18orf25Q96B23 403 aaPredicted RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 GRAMD1AQ96CP6 724 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 RBM15Q96T37 977 aaKnown RBP eCLIP16.79■□□□□ 0.284e-7■■□□□ 14.1
SQSTM1-213ENST00000510187 KCNK9Q9NPC2 374 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 DNAJC17Q9NVM6 304 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 CTNNAL1Q9UBT7 734 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 TUBGCP4Q9UGJ1 667 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 SIX4Q9UIU6 781 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 ITGA11Q9UKX5 1188 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 UBQLN1Q9UMX0 589 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 NAALADL1Q9UQQ1 740 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 EFR3BQ9Y2G0 817 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 PTGESO14684 152 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 XPOTO43592 962 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 MGRN1O60291 552 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 GJB6O95452 261 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 EOMESO95936 686 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 POLR2BP30876 1174 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 VCPP55072 806 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 YWHAEP62258 255 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 FAM189BP81408 668 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 CCDC142Q17RM4 750 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 SGSM1Q2NKQ1 1148 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 PPP1R15BQ5SWA1 713 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 POLNQ7Z5Q5 900 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 TACO1Q9BSH4 297 aaKnown RBP16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 SENP1Q9P0U3 644 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 STRIP2Q9ULQ0 834 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 SHOC2Q9UQ13 582 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 ARL2BPQ9Y2Y0 163 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 CEP83Q9Y592 693 aa16.79■□□□□ 0.28
SQSTM1-213ENST00000510187 RALGAPA2Q2PPJ7 1873 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms