RNA–Protein interactions for RNA: ENST00000508284.5

SQSTM1-212, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-212ENST00000508284 ARSAP15289 507 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 MTIF2P46199 727 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 RAP1GAPP47736 663 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 PPP3CCP48454 512 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 COPB1P53618 953 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 NOP14P78316 857 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 GRSF1Q12849 480 aaKnown RBP eCLIP19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 CCINQ13939 588 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 ZNF77Q15935 545 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 MAN2A1Q16706 1144 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 SGSM1Q2NKQ1 1148 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 CPA6Q8N4T0 437 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 DCLK2Q8N568 766 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 RIN3Q8TB24 985 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 TMC2Q8TDI7 906 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 SH3RF2Q8TEC5 729 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 OSCP1Q8WVF1 389 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 SECISBP2LQ93073 1101 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 EXOC4Q96A65 974 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 ELMO3Q96BJ8 720 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 PDLIM2Q96JY6 352 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 B3GNT5Q9BYG0 378 aa19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 XPO4Q9C0E2 1151 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-212ENST00000508284 LGALS16A8MUM7 142 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 CLDN5O00501 218 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 AKAP3O75969 853 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 VNN1O95497 513 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 TDGF1P13385 188 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 PSMC2P35998 433 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 ZACNQ401N2 412 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 WDR44Q5JSH3 913 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 ATP2A3Q93084 1043 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 EEF2KMTQ96G04 330 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 SLITRK1Q96PX8 696 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 TUBGCP2Q9BSJ2 902 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 TTLL2Q9BWV7 592 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 EPC1Q9H2F5 836 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 TAB2Q9NYJ8 693 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 GCNT4Q9P109 453 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 ARMCX3Q9UH62 379 aaPredicted RBP19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 RAB23Q9ULC3 237 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 SMG5Q9UPR3 1016 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 OBSL1O75147 1896 aa19.09■□□□□ 0.65
SQSTM1-212ENST00000508284 OTOL1A6NHN0 477 aaPredicted RBP19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 KRT13P13646 458 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 PRKCSHP14314 528 aaPredicted RBP19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 PFKLP17858 780 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 PIK3CAP42336 1068 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 ID4P47928 161 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 VAMP7P51809 220 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 CACNA2D1P54289 1103 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 USP4Q13107 963 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 NR1H3Q13133 447 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 SV2AQ7L0J3 742 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 TRIM59Q8IWR1 403 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 FAM186BQ8IYM0 893 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 NUP93Q8N1F7 819 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 TAF4BQ92750 862 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 IMPG2Q9BZV3 1241 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 ECT2Q9H8V3 914 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 ARHGAP26Q9UNA1 814 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 WNT6Q9Y6F9 365 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 SPTBN4Q9H254 2564 aa19.08■□□□□ 0.64
SQSTM1-212ENST00000508284 ZNF292O60281 2723 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 ZNF840PA6NDX5 716 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 TRDMT1O14717 391 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 RTN3O95197 1032 aaPredicted RBP19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 TRIM21P19474 475 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 YWHAQP27348 245 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 ENPEPQ07075 957 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 TAF10Q12962 218 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 TMEM196Q5HYL7 178 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 INTS8Q75QN2 995 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 ACOT1Q86TX2 421 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 FAM35AQ86V20 835 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 P2RY13Q9BPV8 354 aa19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 RTN4Q9NQC3 1192 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-212ENST00000508284 FRYLO94915 3013 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 OTOGLQ3ZCN5 2332 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 KIF26AQ9ULI4 1882 aaPredicted RBP19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 CHURC1-FNTBB4DL54 471 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 ATG13O75143 517 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 PAPSS2O95340 614 aaPredicted RBP19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 HLA-DRAP01903 254 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 GJA4P35212 333 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 FNTBP49356 437 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 GALK1P51570 392 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 NDST1P52848 882 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 EML3Q32P44 896 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 HEATR6Q6AI08 1181 aaKnown RBP19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 FSTL4Q6MZW2 842 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 PRR23BQ6ZRT6 265 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 CREBRFQ8IUR6 639 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 FBXO32Q969P5 355 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 NAP1L5Q96NT1 182 aaPredicted RBP19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 PPP1R9BQ96SB3 815 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 KCNK16Q96T55 309 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 SDCBP2Q9H190 292 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 MMRN2Q9H8L6 949 aa19.06■□□□□ 0.64
SQSTM1-212ENST00000508284 DMAP1Q9NPF5 467 aaPredicted RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms