RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ARSAP15289 507 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 MTIF2P46199 727 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 RAP1GAPP47736 663 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 PPP3CCP48454 512 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 COPB1P53618 953 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 NOP14P78316 857 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 GRSF1Q12849 480 aaKnown RBP eCLIP19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 CCINQ13939 588 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 ZNF77Q15935 545 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 MAN2A1Q16706 1144 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 SGSM1Q2NKQ1 1148 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 CPA6Q8N4T0 437 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 DCLK2Q8N568 766 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 RIN3Q8TB24 985 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 TMC2Q8TDI7 906 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 SH3RF2Q8TEC5 729 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 OSCP1Q8WVF1 389 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 SECISBP2LQ93073 1101 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 EXOC4Q96A65 974 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 ELMO3Q96BJ8 720 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 PDLIM2Q96JY6 352 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 B3GNT5Q9BYG0 378 aa19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 XPO4Q9C0E2 1151 aaKnown RBP19.1■□□□□ 0.65
SQSTM1-209ENST00000504627 LGALS16A8MUM7 142 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 CLDN5O00501 218 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 AKAP3O75969 853 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 VNN1O95497 513 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 TDGF1P13385 188 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 PSMC2P35998 433 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 ZACNQ401N2 412 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 WDR44Q5JSH3 913 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 ATP2A3Q93084 1043 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 EEF2KMTQ96G04 330 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 SLITRK1Q96PX8 696 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 TUBGCP2Q9BSJ2 902 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 TTLL2Q9BWV7 592 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 EPC1Q9H2F5 836 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 TAB2Q9NYJ8 693 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 GCNT4Q9P109 453 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 ARMCX3Q9UH62 379 aaPredicted RBP19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 RAB23Q9ULC3 237 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 SMG5Q9UPR3 1016 aaKnown RBP19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 OBSL1O75147 1896 aa19.09■□□□□ 0.65
SQSTM1-209ENST00000504627 OTOL1A6NHN0 477 aaPredicted RBP19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 KRT13P13646 458 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 PRKCSHP14314 528 aaPredicted RBP19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 PFKLP17858 780 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 PIK3CAP42336 1068 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 ID4P47928 161 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 VAMP7P51809 220 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 CACNA2D1P54289 1103 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 USP4Q13107 963 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 NR1H3Q13133 447 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 SV2AQ7L0J3 742 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 TRIM59Q8IWR1 403 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 FAM186BQ8IYM0 893 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 NUP93Q8N1F7 819 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 TAF4BQ92750 862 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 IMPG2Q9BZV3 1241 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 ECT2Q9H8V3 914 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 ARHGAP26Q9UNA1 814 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 WNT6Q9Y6F9 365 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 SPTBN4Q9H254 2564 aa19.08■□□□□ 0.64
SQSTM1-209ENST00000504627 ZNF292O60281 2723 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 ZNF840PA6NDX5 716 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 TRDMT1O14717 391 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 RTN3O95197 1032 aaPredicted RBP19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 TRIM21P19474 475 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 YWHAQP27348 245 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 ENPEPQ07075 957 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 TAF10Q12962 218 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 TMEM196Q5HYL7 178 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 INTS8Q75QN2 995 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 ACOT1Q86TX2 421 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 FAM35AQ86V20 835 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 P2RY13Q9BPV8 354 aa19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 RTN4Q9NQC3 1192 aaKnown RBP19.07■□□□□ 0.64
SQSTM1-209ENST00000504627 FRYLO94915 3013 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 OTOGLQ3ZCN5 2332 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 KIF26AQ9ULI4 1882 aaPredicted RBP19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 CHURC1-FNTBB4DL54 471 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 ATG13O75143 517 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 PAPSS2O95340 614 aaPredicted RBP19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 HLA-DRAP01903 254 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 GJA4P35212 333 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 FNTBP49356 437 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 GALK1P51570 392 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 NDST1P52848 882 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 EML3Q32P44 896 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 HEATR6Q6AI08 1181 aaKnown RBP19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 FSTL4Q6MZW2 842 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 PRR23BQ6ZRT6 265 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 CREBRFQ8IUR6 639 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 FBXO32Q969P5 355 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 NAP1L5Q96NT1 182 aaPredicted RBP19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 PPP1R9BQ96SB3 815 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 KCNK16Q96T55 309 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 SDCBP2Q9H190 292 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 MMRN2Q9H8L6 949 aa19.06■□□□□ 0.64
SQSTM1-209ENST00000504627 DMAP1Q9NPF5 467 aaPredicted RBP19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms