RNA–Protein interactions for RNA: ENST00000503945.2

MED28-203, Transcript of mediator complex subunit 28, humanhuman

TSL 1 (best)

Gene MED28, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MED28-203ENST00000503945 FSTL4Q6MZW2 842 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 SCARA5Q6ZMJ2 495 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 PAQR9Q6ZVX9 377 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 FAM186BQ8IYM0 893 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 OVCA2Q8WZ82 227 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 CD101Q93033 1021 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 FBXO32Q969P5 355 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 SMARCD1Q96GM5 515 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 GOLPH3LQ9H4A5 285 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 CYP3A43Q9HB55 503 aa12.68□□□□□ -0.38
MED28-203ENST00000503945 FBRSL1Q9HCM7 1045 aaKnown RBP12.68□□□□□ -0.38
MED28-203ENST00000503945 DMAP1Q9NPF5 467 aaPredicted RBP12.68□□□□□ -0.38
MED28-203ENST00000503945 EML5Q05BV3 1969 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 AXIN1O15169 862 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 STX10O60499 249 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 AP1G2O75843 785 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 EGFP01133 1207 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 MBL2P11226 248 aaPredicted RBP12.67□□□□□ -0.38
MED28-203ENST00000503945 EDRF1Q3B7T1 1238 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 C1orf220Q5T0J3 134 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 KRT39Q6A163 491 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.67□□□□□ -0.38
MED28-203ENST00000503945 WDR5BQ86VZ2 330 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 DDX42Q86XP3 938 aaKnown RBP eCLIP12.67□□□□□ -0.38
MED28-203ENST00000503945 FUKQ8N0W3 1084 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 CAMKK1Q8N5S9 505 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 FAM160A2Q8N612 972 aaPredicted RBP12.67□□□□□ -0.38
MED28-203ENST00000503945 SCAMP5Q8TAC9 235 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 RIN3Q8TB24 985 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 SLC2A14Q8TDB8 520 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 CHFRQ96EP1 664 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 CYFIP2Q96F07 1278 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 GSDMAQ96QA5 445 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 NT5C1AQ9BXI3 368 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 GTPBP4Q9BZE4 634 aaKnown RBP12.67□□□□□ -0.38
MED28-203ENST00000503945 SDCBP2Q9H190 292 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 FBXO44Q9H4M3 255 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 MMRN2Q9H8L6 949 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.67□□□□□ -0.38
MED28-203ENST00000503945 SMPD4Q9NXE4 827 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 IL37Q9NZH6 218 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 TBC1D14Q9P2M4 693 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 CPQQ9Y646 472 aa12.67□□□□□ -0.38
MED28-203ENST00000503945 TNFRSF10BO14763 440 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 OAS1P00973 400 aaKnown RBP12.66□□□□□ -0.38
MED28-203ENST00000503945 MAP3K7CLP57077 242 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 ZXDBP98169 803 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 PPP3CAQ08209 521 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 PNOCQ13519 176 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 ZNF658Q5TYW1 1059 aaPredicted RBP12.66□□□□□ -0.38
MED28-203ENST00000503945 SNX30Q5VWJ9 437 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 SPOPLQ6IQ16 392 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 PKN3Q6P5Z2 889 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 CEP68Q76N32 757 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 FILIP1Q7Z7B0 1213 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 FAM35AQ86V20 835 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 FMR1NBQ8N0W7 255 aaPredicted RBP12.66□□□□□ -0.38
MED28-203ENST00000503945 C12orf29Q8N999 325 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 TAS1R2Q8TE23 839 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 HEXIM2Q96MH2 286 aaKnown RBP12.66□□□□□ -0.38
MED28-203ENST00000503945 HNRNPABQ99729 332 aaKnown RBP12.66□□□□□ -0.38
MED28-203ENST00000503945 TSG101Q99816 390 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 NACA2Q9H009 215 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 TMEM8AQ9HCN3 771 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 TMEM30AQ9NV96 361 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 CFAP97Q9P2B7 532 aa12.66□□□□□ -0.38
MED28-203ENST00000503945 TSC2P49815 1807 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 MAP1BP46821 2468 aaKnown RBP12.65□□□□□ -0.38
MED28-203ENST00000503945 CCDC163A0A0D9SF12 145 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 RNF40O75150 1001 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 OLFM2O95897 454 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 FAM200BP0CF97 657 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 TRIM49P0CI25 452 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 TRIM49CP0CI26 452 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 EPB41P11171 864 aaKnown RBP12.65□□□□□ -0.38
MED28-203ENST00000503945 CCDC130P13994 396 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 PRCPP42785 496 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 ASPAP45381 313 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 PXNP49023 591 aaPredicted RBP12.65□□□□□ -0.38
MED28-203ENST00000503945 SLC5A3P53794 718 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 MCCD1P59942 119 aaPredicted RBP12.65□□□□□ -0.38
MED28-203ENST00000503945 USP4Q13107 963 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 ORC1Q13415 861 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 CCDC6Q16204 474 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 TTC39CQ8N584 583 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 SMARCE1Q969G3 411 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 EEF2KMTQ96G04 330 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 FAXDC2Q96IV6 333 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 TIGD1Q96MW7 591 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 SMOQ99835 787 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 ARRDC1-AS1Q9H2J1 176 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 CSNK1G1Q9HCP0 422 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 TLR8Q9NR97 1041 aaKnown RBP12.65□□□□□ -0.38
MED28-203ENST00000503945 KRT82Q9NSB4 513 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 SH3BP1Q9Y3L3 701 aa12.65□□□□□ -0.38
MED28-203ENST00000503945 CNOT1A5YKK6 2376 aaKnown RBP12.65□□□□□ -0.38
MED28-203ENST00000503945 OBSL1O75147 1896 aa12.64□□□□□ -0.39
MED28-203ENST00000503945 E2F8A0AVK6 867 aa12.64□□□□□ -0.39
MED28-203ENST00000503945 COCHO43405 550 aa12.64□□□□□ -0.39
MED28-203ENST00000503945 BEST1O76090 585 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms