RNA–Protein interactions for RNA: ENST00000497498.1

CBX3-208, Transcript of chromobox 3, human

TSL 2

Gene CBX3, Length 922 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CBX3-208	ENST00000497498	RBMS2	Q15434	407 aa	Known RBP	4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	ANO6	Q4KMQ2	910 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	SPART	Q8N0X7	666 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	MPP5	Q8N3R9	675 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	IL31RA	Q8NI17	732 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	PPP1R35	Q8TAP8	253 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	MAML1	Q92585	1016 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	ZNF518B	Q9C0D4	1074 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	EBF3	Q9H4W6	596 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	MTMR4	Q9NYA4	1195 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	PAXBP1	Q9Y5B6	917 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498	CDY1	Q9Y6F8	540 aa		4.27	□□□□□ -1.73
CBX3-208	ENST00000497498		H3BNC9	293 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	SNHG28	P0DPA3	235 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	PRF1	P14222	555 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	HOXD9	P28356	352 aa	Predicted RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	EPHA3	P29320	983 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	PRKAR1B	P31321	381 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	UQCRC1	P31930	480 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	CCKBR	P32239	447 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	TIRAP	P58753	221 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	SRSF1	Q07955	248 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	LARS2	Q15031	903 aa	Known RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	TTF1	Q15361	905 aa	Predicted RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	DCAF12L1	Q5VU92	463 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	ZDHHC24	Q6UX98	284 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	DEF8	Q6ZN54	512 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	PIP4P1	Q86T03	277 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	ZDHHC17	Q8IUH5	632 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	LIX1L	Q8IVB5	337 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	OSR1	Q8TAX0	266 aa	Predicted RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	DNAJB14	Q8TBM8	379 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	JPH3	Q8WXH2	748 aa	Predicted RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	WASF1	Q92558	559 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	MAP4K1	Q92918	833 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	CUL5	Q93034	780 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	SIGLEC11	Q96RL6	698 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	VN1R3	Q9BXE9	311 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	RTFDC1	Q9BY42	306 aa	Predicted RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	TRIM36	Q9NQ86	728 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	A1CF	Q9NQ94	594 aa	Known RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	DNMT3B	Q9UBC3	853 aa	Known RBP	4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	LPAR3	Q9UBY5	353 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	ZNF180	Q9UJW8	692 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	USP22	Q9UPT9	525 aa		4.26	□□□□□ -1.73
CBX3-208	ENST00000497498	ADAM10	O14672	748 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	AKAP10	O43572	662 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	SPRY2	O43597	315 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	TUSC2	O75896	110 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	ATF7	P17544	494 aa	Predicted RBP	4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	IBSP	P21815	317 aa	Predicted RBP	4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	THBS4	P35443	961 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	COPB1	P53618	953 aa	Known RBP	4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	TIAL1	Q01085	375 aa	Known RBP eCLIP	4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	INSC	Q1MX18	579 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	TRIM71	Q2Q1W2	868 aa	Known RBP	4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	DENND2C	Q68D51	928 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	NPNT	Q6UXI9	565 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	EPM2AIP1	Q7L775	607 aa	Predicted RBP	4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	MICU3	Q86XE3	530 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	COL23A1	Q86Y22	540 aa	Predicted RBP	4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	TPH2	Q8IWU9	490 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	OR56A3	Q8NH54	315 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	SNX15	Q9NRS6	342 aa		4.25	□□□□□ -1.73
CBX3-208	ENST00000497498	TBX3	O15119	743 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	CD3EAP	O15446	510 aa	Known RBP	4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	CCP110	O43303	1012 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	CNOT3	O75175	753 aa	Known RBP	4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	RFPL1	O75677	317 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	RNF8	O76064	485 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	CREB1	P16220	341 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	RAB27A	P51159	221 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	CFHR1	Q03591	330 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	SEC23B	Q15437	767 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	KLHL22	Q53GT1	634 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	AWAT1	Q58HT5	328 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	TMTC4	Q5T4D3	741 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	TMEM65	Q6PI78	240 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	MAEA	Q7L5Y9	396 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	OVCH2	Q7RTZ1	564 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	ZBTB34	Q8NCN2	500 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	NSMCE1	Q8WV22	266 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	STAG1	Q8WVM7	1258 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	SPSB4	Q96A44	273 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	WDYHV1	Q96HA8	205 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	SUCLG2	Q96I99	432 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	LRGUK	Q96M69	825 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	PPP1R9B	Q96SB3	815 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	ADGRE3	Q9BY15	652 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	KRTAP2-2	Q9BYT5	123 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	CDH19	Q9H159	772 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	PI4KB	Q9UBF8	816 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	RGS17	Q9UGC6	210 aa	Predicted RBP	4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	ZNF580	Q9UK33	172 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	ZMYM2	Q9UBW7	1377 aa		4.24	□□□□□ -1.73
CBX3-208	ENST00000497498	LOC102723971	A0A1B0GUV8	181 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	TRIM43B	A6NCK2	446 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	FAM90A10P	A6NDY2	464 aa		4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	MBD3L4	A6NDZ8	208 aa	Predicted RBP	4.23	□□□□□ -1.73
CBX3-208	ENST00000497498	MBD3L3	A6NE82	208 aa	Predicted RBP	4.23	□□□□□ -1.73

Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms