RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SIT1Q9Y3P8 196 aa17.28■□□□□ 0.36
SF3A1-209ENST00000496189 PIAS3Q9Y6X2 628 aa17.28■□□□□ 0.36
SF3A1-209ENST00000496189 OBSL1O75147 1896 aa17.28■□□□□ 0.36
SF3A1-209ENST00000496189 ZNF638Q14966 1978 aaKnown RBP17.28■□□□□ 0.36
SF3A1-209ENST00000496189 GREB1Q4ZG55 1949 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 DENND4CQ5VZ89 1909 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 GOLGA6L19H0YKK7 550 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 BEST1O76090 585 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 IFNAR2P48551 515 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 PSEN1P49768 467 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 TUBP50607 506 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 GOLGA8FQ08AF8 430 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 GOLGA8DPQ0D2H9 430 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 PDGFRLQ15198 375 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 KRT31Q15323 416 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 ARHGEF19Q8IW93 802 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 DHX40Q8IX18 779 aaKnown RBP17.27■□□□□ 0.36
SF3A1-209ENST00000496189 RSPRY1Q96DX4 576 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 VPS16Q9H269 839 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 LRRC4Q9HBW1 653 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 IL37Q9NZH6 218 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 GMIPQ9P107 970 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 APEX2Q9UBZ4 518 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 LIMA1Q9UHB6 759 aaKnown RBP17.27■□□□□ 0.36
SF3A1-209ENST00000496189 CHORDC1Q9UHD1 332 aaPredicted RBP17.27■□□□□ 0.36
SF3A1-209ENST00000496189 ARHGAP26Q9UNA1 814 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 CCL26Q9Y258 94 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 TRIOO75962 3097 aa17.27■□□□□ 0.36
SF3A1-209ENST00000496189 FAM92AA1XBS5 289 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 MED7O43513 233 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 OAS1P00973 400 aaKnown RBP17.26■□□□□ 0.35
SF3A1-209ENST00000496189 SETSIPP0DME0 302 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 RALAP11233 206 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 ZNF18P17022 549 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 USP8P40818 1118 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 MLLT6P55198 1093 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-209ENST00000496189 SLC7A9P82251 487 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 NR1H3Q13133 447 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 MTF1Q14872 753 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 ITPRIPL2Q3MIP1 535 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 MIIPQ5JXC2 388 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 CWF19L1Q69YN2 538 aaKnown RBP17.26■□□□□ 0.35
SF3A1-209ENST00000496189 ARHGAP18Q8N392 663 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 UBR7Q8N806 425 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 SH3RF2Q8TEC5 729 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 ATP2A3Q93084 1043 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 CDK5RAP1Q96SZ6 601 aaKnown RBP17.26■□□□□ 0.35
SF3A1-209ENST00000496189 OSBPL6Q9BZF3 934 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 IRF2BPLQ9H1B7 796 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 TSPY26PQ9H489 355 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 GKN1Q9NS71 199 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 SCML2Q9UQR0 700 aa17.26■□□□□ 0.35
SF3A1-209ENST00000496189 ARIH1Q9Y4X5 557 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-209ENST00000496189 LRRC10BA6NIK2 292 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 SLC9A3R1O14745 358 aaPredicted RBP17.25■□□□□ 0.35
SF3A1-209ENST00000496189 XPO1O14980 1071 aaKnown RBP17.25■□□□□ 0.35
SF3A1-209ENST00000496189 TCF3P15923 654 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 SLC9A1P19634 815 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 PON1P27169 355 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 MAGEA9P43362 315 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 KIF11P52732 1056 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 COPB1P53618 953 aaKnown RBP17.25■□□□□ 0.35
SF3A1-209ENST00000496189 VCPP55072 806 aaKnown RBP17.25■□□□□ 0.35
SF3A1-209ENST00000496189 USP4Q13107 963 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 IQCB1Q15051 598 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 FILIP1LQ4L180 1135 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 SNX30Q5VWJ9 437 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 SMYD5Q6GMV2 418 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 LRSAM1Q6UWE0 723 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 RALGPS2Q86X27 583 aaPredicted RBP17.25■□□□□ 0.35
SF3A1-209ENST00000496189 SIX6OS1Q8N1H7 587 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 CPA6Q8N4T0 437 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 PJA1Q8NG27 643 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 FAM3CQ92520 227 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 KAT5Q92993 513 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 ZFYVE19Q96K21 471 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 SLC22A12Q96S37 553 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 CBX8Q9HC52 389 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 DUS2Q9NX74 493 aaKnown RBP17.25■□□□□ 0.35
SF3A1-209ENST00000496189 NAGPAQ9UK23 515 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 CPQQ9Y646 472 aa17.25■□□□□ 0.35
SF3A1-209ENST00000496189 FAM170BA6NMN3 283 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 M0QYV0 167 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 LEFTY2O00292 366 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 O00370 1275 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 CYP26A1O43174 497 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 TLR5O60602 858 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 ATP5C1P36542 298 aaKnown RBP17.24■□□□□ 0.35
SF3A1-209ENST00000496189 RUNX3Q13761 415 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 ZNF77Q15935 545 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 CNGA2Q16280 664 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 ARHGAP44Q17R89 818 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 LCLAT1Q6UWP7 414 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 CCDC186Q7Z3E2 898 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 PIGZQ86VD9 579 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 KIAA1958Q8N8K9 716 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 TMEM105Q8N8V8 129 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 OSCP1Q8WVF1 389 aa17.24■□□□□ 0.35
SF3A1-209ENST00000496189 DDX23Q9BUQ8 820 aaKnown RBP17.24■□□□□ 0.35
SF3A1-209ENST00000496189 LTB4R2Q9NPC1 389 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms