RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 TDRD10Q5VZ19 366 aaKnown RBP12.96□□□□□ -0.33
UPF3A-210ENST00000493727 ALKAL1Q6UXT8 129 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 TRAPPC11Q7Z392 1133 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 DCLK2Q8N568 766 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 OR5B17Q8NGF7 314 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 FGF13Q92913 245 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 MRFAP1L1Q96HT8 127 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 FAM84AQ96KN4 292 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 CRACR2AQ9BSW2 395 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 LSM14BQ9BX40 385 aaKnown RBP12.96□□□□□ -0.33
UPF3A-210ENST00000493727 IMPG2Q9BZV3 1241 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 FOXQ1Q9C009 403 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 CXCL16Q9H2A7 254 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 ZNF232Q9UNY5 417 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 CDY1Q9Y6F8 540 aa12.96□□□□□ -0.33
UPF3A-210ENST00000493727 GTPBP10A4D1E9 387 aaKnown RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 GOLGA6L6A8MZA4 724 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 PODXLO00592 558 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 ADAM12O43184 909 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 LRRN2O75325 713 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 ELF1P32519 619 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 GUCY2FP51841 1108 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 PFKPQ01813 784 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 UBAP2LQ14157 1087 aaKnown RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 ZACNQ401N2 412 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 PABPC1LQ4VXU2 614 aaKnown RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 SLC8B1Q6J4K2 584 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 FBXL13Q8NEE6 735 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 ZNF461Q8TAF7 563 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 FGF14Q92915 247 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 C18orf25Q96B23 403 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 ZMAT2Q96NC0 199 aaKnown RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 RPP25Q9BUL9 199 aaKnown RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 DDX23Q9BUQ8 820 aaKnown RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 INTS2Q9H0H0 1204 aaKnown RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 GOLGA2P5Q9HBQ8 144 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 AVENQ9NQS1 362 aaPredicted RBP12.95□□□□□ -0.34
UPF3A-210ENST00000493727 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.95□□□□□ -0.345e-6■■■■■ 31.1
UPF3A-210ENST00000493727 DPP3Q9NY33 737 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 TUBGCP4Q9UGJ1 667 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 ITGA11Q9UKX5 1188 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 NUB1Q9Y5A7 615 aa12.95□□□□□ -0.34
UPF3A-210ENST00000493727 A0A1W2PQC6 194 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 HLA-DRAP01903 254 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 LRG1P02750 347 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 C4BPAP04003 597 aaKnown RBP12.94□□□□□ -0.34
UPF3A-210ENST00000493727 ITGB3P05106 788 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 TPM1P09493 284 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 POLR2BP30876 1174 aaKnown RBP12.94□□□□□ -0.34
UPF3A-210ENST00000493727 GMPRP36959 345 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 BRCC3P46736 316 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 RBP5P82980 135 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 ZNF528Q3MIS6 628 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 CD300LGQ6UXG3 332 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 TMC6Q7Z403 805 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 C1orf127Q8N9H9 656 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 C3orf58Q8NDZ4 430 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 APPL2Q8NEU8 664 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 ST13P5Q8NFI4 369 aaPredicted RBP12.94□□□□□ -0.34
UPF3A-210ENST00000493727 NEK11Q8NG66 645 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 TAS1R2Q8TE23 839 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 ERGIC2Q96RQ1 377 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 NUCKS1Q9H1E3 243 aaKnown RBP12.94□□□□□ -0.34
UPF3A-210ENST00000493727 RAB20Q9NX57 234 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 GDE1Q9NZC3 331 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 MAFFQ9ULX9 164 aa12.94□□□□□ -0.34
UPF3A-210ENST00000493727 MRPS23Q9Y3D9 190 aaKnown RBP12.94□□□□□ -0.34
UPF3A-210ENST00000493727 CNOT1A5YKK6 2376 aaKnown RBP12.94□□□□□ -0.34
UPF3A-210ENST00000493727 ARHGEF37A1IGU5 675 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 PRRG1O14668 218 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 PMM2O15305 246 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 TRIM21P19474 475 aaKnown RBP12.93□□□□□ -0.34
UPF3A-210ENST00000493727 CYP3A5P20815 502 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 GPC5P78333 572 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 NTHL1P78549 312 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 ROR1Q01973 937 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 PRKCQQ04759 706 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 SOX4Q06945 474 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-210ENST00000493727 LRMPQ12912 555 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 LBRQ14739 615 aaKnown RBP12.93□□□□□ -0.34
UPF3A-210ENST00000493727 OCLNQ16625 522 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 ZNF699Q32M78 642 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 TPGS2Q68CL5 300 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 SPECC1LQ69YQ0 1117 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 PARM1Q6UWI2 310 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 RSPO2Q6UXX9 243 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-210ENST00000493727 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-210ENST00000493727 VSTM4Q8IW00 320 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 PGBD3Q8N328 593 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 ELMOD1Q8N336 334 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 SUSD3Q96L08 255 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 ZNF560Q96MR9 790 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 NT5C1BQ96P26 610 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 FAM207AQ9NSI2 230 aaPredicted RBP12.93□□□□□ -0.34
UPF3A-210ENST00000493727 DNMT3BQ9UBC3 853 aaKnown RBP12.93□□□□□ -0.34
UPF3A-210ENST00000493727 AGAP1Q9UPQ3 857 aa12.93□□□□□ -0.34
UPF3A-210ENST00000493727 USP24Q9UPU5 2620 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 KANSL1LA0AUZ9 987 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 I3L4J1 428 aa12.92□□□□□ -0.34
UPF3A-210ENST00000493727 ZNF197O14709 1029 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms