RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ZNF148Q9UQR1 794 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 SCN10AQ9Y5Y9 1956 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 LAMA3Q16787 3333 aa11.24□□□□□ -0.61
USP4-214ENST00000491791 TRIP11Q15643 1979 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 SCN1AP35498 2009 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 GMNCA6NCL1 334 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 DCDC2CA8MYV0 355 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 E7EVH7 732 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 EBAG9O00559 213 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 GABRDO14764 452 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 PPEF2O14830 753 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 PAPSS1O43252 624 aaPredicted RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 MYL3P08590 195 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 CYBAP13498 195 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 TGM2P21980 687 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 MAGEA4P43358 317 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 BCAT1P54687 386 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 MRPS6P82932 125 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 OTUD4Q01804 1114 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 BST2Q10589 180 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 NR1H3Q13133 447 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 NOMO1Q15155 1222 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 P3H1Q32P28 736 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 SLC9A4Q6AI14 798 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 OR6B2Q6IFH4 312 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 C4orf22Q6V702 233 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 BNIPLQ7Z465 357 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 MRPL10Q7Z7H8 261 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 ACOT1Q86TX2 421 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 NLRP14Q86W24 1093 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 EMC1Q8N766 993 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 MYCBPAPQ8TBZ2 947 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 KCTD13Q8WZ19 329 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 TRIB2Q92519 343 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 PRCCQ92733 491 aaPredicted RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 C18orf25Q96B23 403 aaPredicted RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 TNIP3Q96KP6 325 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 CFAP57Q96MR6 1250 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 RNF157Q96PX1 679 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 PPP1R10Q96QC0 940 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 PEBP4Q96S96 227 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 CCT8L2Q96SF2 557 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 RBM15Q96T37 977 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP4-214ENST00000491791 HNRNPABQ99729 332 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 GDF15Q99988 308 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 CCDC77Q9BR77 488 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 ZNF670Q9BS34 389 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 DDX23Q9BUQ8 820 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 FRMD8Q9BZ67 464 aaPredicted RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 TRIM6Q9C030 488 aaPredicted RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 SLC38A7Q9NVC3 462 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 PIN4Q9Y237 131 aaKnown RBP11.23□□□□□ -0.61
USP4-214ENST00000491791 IPPQ9Y573 584 aa11.23□□□□□ -0.61
USP4-214ENST00000491791 CFAP69A5D8W1 941 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 TULP2O00295 520 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 DLL1O00548 723 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 XPO1O14980 1071 aaKnown RBP11.22□□□□□ -0.61
USP4-214ENST00000491791 SPTLC1O15269 473 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 PRPSAP2O60256 369 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 ZNF623O75123 536 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 CDH16O75309 829 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 FGFR1P11362 822 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 DESP17661 470 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 IL4RP24394 825 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 HPDP32754 393 aaPredicted RBP11.22□□□□□ -0.61
USP4-214ENST00000491791 RDXP35241 583 aaKnown RBP11.22□□□□□ -0.61
USP4-214ENST00000491791 GNL1P36915 607 aaPredicted RBP11.22□□□□□ -0.61
USP4-214ENST00000491791 MAGEA6P43360 314 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 LILRA4P59901 499 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 PDE4CQ08493 712 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 TMEM62Q0P6H9 643 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 TRIM32Q13049 653 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 ORC1Q13415 861 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 DPYSL3Q14195 570 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 LLGL1Q15334 1064 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 DPYSL2Q16555 572 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 KYNUQ16719 465 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 EFHC1Q5JVL4 640 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 MAP3K21Q5TCX8 1036 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 FOXR1Q6PIV2 292 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 C6orf89Q6UWU4 347 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 STRADAQ7RTN6 431 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 GSTA5Q7RTV2 222 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 SRLQ86TD4 932 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 FAM228AQ86W67 206 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 PPIL6Q8IXY8 311 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 TMEM86AQ8N2M4 240 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 C7orf31Q8N865 590 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 C12orf29Q8N999 325 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 NAT8LQ8N9F0 302 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 KCTD6Q8NC69 237 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 TRPV1Q8NER1 839 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 APPL2Q8NEU8 664 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 ATXN2LQ8WWM7 1075 aaKnown RBP11.22□□□□□ -0.61
USP4-214ENST00000491791 NT5C3BQ969T7 300 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 LRCH3Q96II8 777 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 XPO6Q96QU8 1125 aaKnown RBP11.22□□□□□ -0.61
USP4-214ENST00000491791 RNF39Q9H2S5 420 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 ZWILCHQ9H900 591 aa11.22□□□□□ -0.61
USP4-214ENST00000491791 UBN1Q9NPG3 1134 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms