RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 LAYNQ6UX15 382 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 MOGAT3Q86VF5 341 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 GAS2L3Q86XJ1 694 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 CCDC117Q8IWD4 279 aaPredicted RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 ZFPM1Q8IX07 1006 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 PSD4Q8NDX1 1056 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 PPHLN1Q8NEY8 458 aaKnown RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 IL17REQ8NFR9 667 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 ZNF384Q8TF68 577 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 USP13Q92995 863 aaPredicted RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 RILPL2Q969X0 211 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 NELL2Q99435 816 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 SENP7Q9BQF6 1050 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 TMX4Q9H1E5 349 aaPredicted RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 DHX36Q9H2U1 1008 aaKnown RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 EPS8L2Q9H6S3 715 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 MLXIPQ9HAP2 919 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 TMEM8AQ9HCN3 771 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 XPNPEP3Q9NQH7 507 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 HECAQ9UBI9 543 aaPredicted RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 DKK4Q9UBT3 224 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 RGS17Q9UGC6 210 aaPredicted RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 FBXO9Q9UK97 447 aaPredicted RBP4.64□□□□□ -1.67
PTCD3-216ENST00000487043 CAPN11Q9UMQ6 739 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 SHOC2Q9UQ13 582 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 CRYL1Q9Y2S2 319 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 SETBP1Q9Y6X0 1596 aa4.64□□□□□ -1.67
PTCD3-216ENST00000487043 SCAF11Q99590 1463 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 ARHGAP23Q9P227 1491 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SLIT1O75093 1534 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 ADGRB1O14514 1584 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 A0A0B4J269 797 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 A0A1B0GVC2 190 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 AQP7P3A6NL99 342 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 EYA2O00167 538 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SUV39H1O43463 412 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 RGS10O43665 173 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 RRP9O43818 475 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 IPO13O94829 963 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 FSHBP01225 129 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 POLBP06746 335 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 ITGA2BP08514 1039 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 NPPBP16860 134 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 RPS19P39019 145 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 TOB1P50616 345 aaPredicted RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 GEMIN4P57678 1058 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SATB1Q01826 763 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 DDX10Q13206 875 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 G3BP1Q13283 466 aaKnown RBP eCLIP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SIM2Q14190 667 aaPredicted RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 TSHZ3Q63HK5 1081 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 TANGO2Q6ICL3 276 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 TAF2Q6P1X5 1199 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 MZT2AQ6P582 158 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 DRICH1Q6PGQ1 229 aaPredicted RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 MAATS1Q7Z4T9 603 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 PLEKHH3Q7Z736 793 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SYT12Q8IV01 421 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 FTSJ3Q8IY81 847 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 LGI4Q8N135 537 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 NAXEQ8NCW5 288 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 OR52N2Q8NGI0 321 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 OR1N1Q8NGS0 311 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 BPIFB1Q8TDL5 484 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 OTUD7AQ8TE49 926 aaPredicted RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 EID2BQ96D98 161 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 C8orf49Q96NF6 230 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 GNRHR2Q96P88 292 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 TESK2Q96S53 571 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 REXO4Q9GZR2 422 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SEC61A2Q9H9S3 476 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 PLA2G3Q9NZ20 509 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 KIF17Q9P2E2 1029 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 IFT80Q9P2H3 777 aaPredicted RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 PDP2Q9P2J9 529 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SRP68Q9UHB9 627 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 HERC5Q9UII4 1024 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 MTO1Q9Y2Z2 717 aaKnown RBP4.63□□□□□ -1.67
PTCD3-216ENST00000487043 SH3BP1Q9Y3L3 701 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 RAD54BQ9Y620 910 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 HS3ST4Q9Y661 456 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 AATKQ6ZMQ8 1374 aa4.63□□□□□ -1.67
PTCD3-216ENST00000487043 MYO3AQ8NEV4 1616 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 ALKQ9UM73 1620 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 IQGAP1P46940 1657 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 CCDC195A0A1B0GUA6 201 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 hCG_1984214I3L0E3 225 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 J3KRW8 73 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 MATN3O15232 486 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 DNPH1O43598 174 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 CENPBP07199 599 aaPredicted RBP4.62□□□□□ -1.67
PTCD3-216ENST00000487043 ATXN1LP0C7T5 689 aaKnown RBP4.62□□□□□ -1.67
PTCD3-216ENST00000487043 SPATA31D3P0C874 917 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 SRGAP2BP0DMP2 458 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 CKMT1AP12532 417 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 GCSHP23434 173 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 MSX2P35548 267 aaPredicted RBP4.62□□□□□ -1.67
PTCD3-216ENST00000487043 DDIT3P35638 169 aa4.62□□□□□ -1.67
PTCD3-216ENST00000487043 GCLCP48506 637 aaPredicted RBP4.62□□□□□ -1.67
PTCD3-216ENST00000487043 ZNF134P52741 427 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms