RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MTFR1Q15390 333 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SLFN11Q7Z7L1 901 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 WDR48Q8TAF3 677 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 ANKRD27Q96NW4 1050 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 YIPF2Q9BWQ6 316 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 KLHL4Q9C0H6 718 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SYNDIG1Q9H7V2 258 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 GGA3Q9NZ52 723 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 LRRC10BA6NIK2 292 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 USP1O94782 785 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 KRT8P05787 483 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 TFE3P19532 575 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 RAP1GAPP47736 663 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 AMHR2Q16671 573 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SPDYCQ5MJ68 293 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 WASHC2DQ5SRD0 308 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 ARHGEF19Q8IW93 802 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 JADE3Q92613 823 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SLC5A5Q92911 643 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 ECSITQ9BQ95 431 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 IARS2Q9NSE4 1012 aaKnown RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 ADGRB2O60241 1585 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 DDX3XO00571 662 aaKnown RBP eCLIP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 DNALI1O14645 258 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 DDX53Q86TM3 631 aaKnown RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 CHSY1Q86X52 802 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 AGBL3Q8NEM8 1001 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SLC35C1Q96A29 364 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 APOL5Q9BWW9 433 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 C6orf222P0C671 652 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 PYGMP11217 842 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 PSMC3P17980 439 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 ACTL9Q8TC94 416 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 PAIP2BQ9ULR5 123 aaKnown RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SCAF8Q9UPN6 1271 aaKnown RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 TMX2Q9Y320 296 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 EVPLLA8MZ36 301 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 EFCAB14O75071 495 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 PRAMEF18Q5VWM3 479 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 PDPK2PQ6A1A2 396 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 ADCK2Q7Z695 626 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 TATDN2Q93075 761 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 TUBGCP3Q96CW5 907 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 PAWRQ96IZ0 340 aaKnown RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 ZNF512Q96ME7 567 aaPredicted RBP16.99■□□□□ 0.31
COL7A1-210ENST00000487017 APPL1Q9UKG1 709 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SOX13Q9UN79 622 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 AP4E1Q9UPM8 1137 aa16.99■□□□□ 0.31
COL7A1-210ENST00000487017 SLCO1B7G3V0H7 640 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 TFRCP02786 760 aaKnown RBP16.98■□□□□ 0.31
COL7A1-210ENST00000487017 MYL6P60660 151 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 GTF2H3Q13889 308 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 SKIV2LQ15477 1246 aaKnown RBP16.98■□□□□ 0.31
COL7A1-210ENST00000487017 TRMT5Q32P41 509 aaKnown RBP16.98■□□□□ 0.31
COL7A1-210ENST00000487017 GPR63Q9BZJ6 419 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 FAM237AA0A1B0GTK4 181 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 TPST1O60507 370 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 IZUMO2Q6UXV1 221 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 GPR141Q7Z602 305 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 STRA8Q7Z7C7 330 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 PALMDQ9NP74 551 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 ARIH2O95376 493 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 CPA3P15088 417 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 HOXD10P28358 340 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 CLK1P49759 484 aaKnown RBP16.98■□□□□ 0.31
COL7A1-210ENST00000487017 SGO1Q5FBB7 561 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 MRNIPQ6NTE8 343 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 TXNRD3Q86VQ6 643 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 P3H2Q8IVL5 708 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 CCDC33Q8N5R6 958 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 TSEN2Q8NCE0 465 aaKnown RBP16.98■□□□□ 0.31
COL7A1-210ENST00000487017 PGM2Q96G03 612 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 TMEM176AQ96HP8 235 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 NINJ2Q9NZG7 142 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 SPATA31A5Q5VU36 1347 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 SPATA31A7Q8IWB4 1347 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 RARAP10276 462 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 ZNF484Q5JVG2 852 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 EMC1Q8N766 993 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 STKLD1Q8NE28 680 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 PXMP2Q9NR77 195 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 BLOC1S4Q9NUP1 217 aa16.98■□□□□ 0.31
COL7A1-210ENST00000487017 BCAT1P54687 386 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 IFI35P80217 286 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 GLRA4Q5JXX5 417 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 UGT3A1Q6NUS8 523 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 PRMT6Q96LA8 375 aaPredicted RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 ZNF446Q9NWS9 450 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 AP4S1Q9Y587 144 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 RPS12P25398 132 aaKnown RBP16.97■□□□□ 0.31
COL7A1-210ENST00000487017 MGAT5BQ3V5L5 792 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 LRRC4BQ9NT99 713 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 SNX13Q9Y5W8 968 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 STAG3L1P0CL83 205 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 SLC2A3P11169 496 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 GLRBP48167 497 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 DEFA1P59665 94 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 DEFA3P59666 94 aa16.97■□□□□ 0.31
COL7A1-210ENST00000487017 RPL10AP62906 217 aaKnown RBP16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms