RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 USP18Q9UMW8 372 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 L3MBTL1Q9Y468 752 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TIMM13Q9Y5L4 95 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 SLC15A5A6NIM6 579 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 KPNA7A9QM74 516 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 H7C4K7 107 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 HNRNPH3P31942 346 aaKnown RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 STIP1P31948 543 aaKnown RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 TMC3Q7Z5M5 1100 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 RIBC1Q8N443 379 aaPredicted RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 ATPAF2Q8N5M1 289 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 ACTL9Q8TC94 416 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 ITGA11Q9UKX5 1188 aa11.45□□□□□ -0.58
HDAC6-228ENST00000486227 REXO2Q9Y3B8 237 aaKnown RBP11.45□□□□□ -0.58
HDAC6-228ENST00000486227 LYPLA2O95372 231 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 URODP06132 367 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 GJB1P08034 283 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 TAC1P20366 129 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 BEX3Q00994 111 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 ZBTB17Q13105 803 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 MFSD10Q14728 455 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 PRAMEF19Q5SWL8 479 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 MTMR14Q8NCE2 650 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 LNX1Q8TBB1 728 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-228ENST00000486227 KRT35Q92764 455 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 APOBEC2Q9Y235 224 aaKnown RBP11.44□□□□□ -0.58
HDAC6-228ENST00000486227 MAGEA13PA6NCF6 341 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 MAFO75444 373 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-228ENST00000486227 RARGP13631 454 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 DAB2IPQ5VWQ8 1189 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 TRIML2Q8N7C3 387 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 RMDN1Q96DB5 314 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 RXFP1Q9HBX9 757 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 GOLGA8QA0A0J9YX86 632 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 GOLGA8OA6NCC3 632 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 GOLGA8NF8WBI6 632 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 CABYRO75952 493 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 MCL1Q07820 350 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 KRT80Q6KB66 452 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 FOXR2Q6PJQ5 311 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 IRF2BP2Q7Z5L9 587 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 PGBD3Q8N328 593 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 CENPTQ96BT3 561 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 PPCSQ9HAB8 311 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 KDM3BQ7LBC6 1761 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 CASTOR2A6NHX0 329 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 KPNB1Q14974 876 aaKnown RBP11.44□□□□□ -0.58
HDAC6-228ENST00000486227 CCNG2Q16589 344 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 EPS8L3Q8TE67 593 aaKnown RBP11.44□□□□□ -0.58
HDAC6-228ENST00000486227 GFM2Q969S9 779 aaKnown RBP11.44□□□□□ -0.58
HDAC6-228ENST00000486227 HSD3B7Q9H2F3 369 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 DCLRE1BQ9H816 532 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 SARS2Q9NP81 518 aaKnown RBP11.44□□□□□ -0.58
HDAC6-228ENST00000486227 ENTPD7Q9NQZ7 604 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 PCDHB12Q9Y5F1 795 aa11.44□□□□□ -0.58
HDAC6-228ENST00000486227 RARAP10276 462 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 ACAT1P24752 427 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 TNFSF9P41273 254 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 ELAVL2Q12926 359 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 PTK7Q13308 1070 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 MED21Q13503 144 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 SPDYCQ5MJ68 293 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 LBX2Q6XYB7 198 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 RGS9BPQ6ZS82 235 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 TMC7Q7Z402 723 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 KIAA0319LQ8IZA0 1049 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 OR5B17Q8NGF7 314 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 TTC8Q8TAM2 541 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 MAGEC3Q8TD91 643 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 PGM2Q96G03 612 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 WNK4Q96J92 1243 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 FAM96AQ9H5X1 160 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 PSEN2P49810 448 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 HSDL1Q3SXM5 330 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 FAM71AQ8IYT1 594 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 IQCKQ8N0W5 287 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 SHC3Q92529 594 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 KAT2BQ92831 832 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 VCPIP1Q96JH7 1222 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 PDGFCQ9NRA1 345 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 GTSE1Q9NYZ3 720 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 DPP7Q9UHL4 492 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 PCDHA3Q9Y5H8 950 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 RGPD5Q99666 1765 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 ATXN8OSP0DMR3 200 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 CASP2P42575 452 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 NCKAP1LP55160 1127 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 OCRLQ01968 901 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 RRP1BQ14684 758 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 TDRD10Q5VZ19 366 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 ABHD15Q6UXT9 468 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 HIPK4Q8NE63 616 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 ATXN2LQ8WWM7 1075 aaKnown RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 CLEC4DQ8WXI8 215 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 EFHD1Q9BUP0 239 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 WDCPQ9H6R7 721 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 NPHS2Q9NP85 383 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 KANSL3Q9P2N6 904 aa11.43□□□□□ -0.58
HDAC6-228ENST00000486227 UBA6A0AVT1 1052 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-228ENST00000486227 USP2O75604 605 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms