RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 C2orf16Q68DN1 1984 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 NOTCH4Q99466 2003 aa12.88□□□□□ -0.35
SDC1-206ENST00000482879 ZNF263O14978 683 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 PAPSS1O43252 624 aaPredicted RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 FBXO21O94952 628 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 LCA5LO95447 670 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 ZBED1O96006 694 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 H2AFZP0C0S5 128 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 HMGA1P17096 107 aaKnown RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 MAGEA1P43355 309 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 GALCP54803 685 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 PTP4A2Q12974 167 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 ZNF268Q14587 947 aaPredicted RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 CCDC85BQ15834 202 aaPredicted RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 RARS2Q5T160 578 aaKnown RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 C10orf76Q5T2E6 689 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 ANKRD54Q6NXT1 300 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 TMC5Q6UXY8 1006 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 H2AFVQ71UI9 128 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 PHLDB2Q86SQ0 1253 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 CMASQ8NFW8 434 aaPredicted RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 NDRG1Q92597 394 aaKnown RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 FBXO32Q969P5 355 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 VCPIP1Q96JH7 1222 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 TTLL2Q9BWV7 592 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 KCNF1Q9H3M0 494 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 SFXN1Q9H9B4 322 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 PIDD1Q9HB75 910 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 LUC7LQ9NQ29 371 aaKnown RBP12.87□□□□□ -0.35
SDC1-206ENST00000482879 CNGB3Q9NQW8 809 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 STRIP2Q9ULQ0 834 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 SCML2Q9UQR0 700 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 PCDHA13Q9Y5I0 950 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 USP3Q9Y6I4 520 aa12.87□□□□□ -0.35
SDC1-206ENST00000482879 ANKRD62A6NC57 917 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 GOLGA8SH3BPF8 625 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 POU2F2P09086 479 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 HOXB8P17481 243 aaPredicted RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 PTPN2P17706 415 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 ABCB4P21439 1286 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 DAOAP59103 153 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 KRT83P78385 493 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 MRPS5P82675 430 aaKnown RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 SLC6A3Q01959 620 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 TAF10Q12962 218 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 CTC1Q2NKJ3 1217 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 PM20D1Q6GTS8 502 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 FAM183BPQ6ZVS7 135 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 XYLT1Q86Y38 959 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 ZDHHC17Q8IUH5 632 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 HS6ST3Q8IZP7 471 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 ACRBPQ8NEB7 543 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 CLEC4CQ8WTT0 213 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 PPM1EQ8WY54 764 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 SMG7Q92540 1137 aaKnown RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 ZNF707Q96C28 371 aaPredicted RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 ZNF653Q96CK0 615 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 PABPC5Q96DU9 382 aaKnown RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 TRIM11Q96F44 468 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 TRMT2BQ96GJ1 504 aaKnown RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 MYRFLQ96LU7 910 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 SLITRK1Q96PX8 696 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 CORO1BQ9BR76 489 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 DESI2Q9BSY9 194 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 APOL5Q9BWW9 433 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 PACSIN1Q9BY11 444 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 HCFC1R1Q9NWW0 138 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 WDR35Q9P2L0 1181 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 UXTQ9UBK9 157 aaPredicted RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 CHORDC1Q9UHD1 332 aaPredicted RBP12.86□□□□□ -0.35
SDC1-206ENST00000482879 OBSL1O75147 1896 aa12.86□□□□□ -0.35
SDC1-206ENST00000482879 FAM92AA1XBS5 289 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 SART1O43290 800 aaKnown RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 MYBL1P10243 752 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 MYL4P12829 197 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 RRM1P23921 792 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 GPC5P78333 572 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 DLX2Q07687 328 aaPredicted RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 COL19A1Q14993 1142 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 SKIV2LQ15477 1246 aaKnown RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 SYCE2Q6PIF2 218 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 TOGARAM2Q6ZUX3 1019 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 GRASPQ7Z6J2 395 aaPredicted RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 SCML4Q8N228 414 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 CTNNBL1Q8WYA6 563 aaPredicted RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 IRGQQ8WZA9 623 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 MCRS1Q96EZ8 462 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 THAP2Q9H0W7 228 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 ZNF334Q9HCZ1 680 aaPredicted RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 ASAH2Q9NR71 780 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 GMIPQ9P107 970 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 CLEC1BQ9P126 229 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 DNMT3BQ9UBC3 853 aaKnown RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 MYO1AQ9UBC5 1043 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 CNOT8Q9UFF9 292 aaKnown RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 INTUQ9ULD6 942 aa12.85□□□□□ -0.35
SDC1-206ENST00000482879 REXO2Q9Y3B8 237 aaKnown RBP12.85□□□□□ -0.35
SDC1-206ENST00000482879 A0A1W2PQH9 124 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 YJEFN3A6XGL0 299 aa12.84□□□□□ -0.35
SDC1-206ENST00000482879 E7ENQ6 273 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms