RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 POTEJP0CG39 1038 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 MYCLP1P12525 358 aaPredicted RBP8.74□□□□□ -1.01
VAPB-205ENST00000476395 ATP6V1B1P15313 513 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 CCR3P51677 355 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 NRLP54845 237 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 EMP3P54852 163 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 CETN1Q12798 172 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 PDK4Q16654 411 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 XKR9Q5GH70 373 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 RSBN1LQ6PCB5 846 aaPredicted RBP8.74□□□□□ -1.01
VAPB-205ENST00000476395 PPP1R21Q6ZMI0 780 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 SMC1BQ8NDV3 1235 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 CFAP61Q8NHU2 1237 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 USP29Q9HBJ7 922 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 ANKFY1Q9P2R3 1169 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 RABGEF1Q9UJ41 708 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.74□□□□□ -1.01
VAPB-205ENST00000476395 TFPTP0C1Z6 253 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 MMP8P22894 467 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 PEX2P28328 305 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 STIP1P31948 543 aaKnown RBP8.74□□□□□ -1.01
VAPB-205ENST00000476395 CAV1Q03135 178 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 TRIM67Q6ZTA4 783 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 GSTCDQ8NEC7 633 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 THTPAQ9BU02 230 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 HOMER2Q9NSB8 354 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 TBC1D22BQ9NU19 505 aa8.74□□□□□ -1.01
VAPB-205ENST00000476395 DDX43Q9NXZ2 648 aaKnown RBP8.74□□□□□ -1.01
VAPB-205ENST00000476395 SAE1Q9UBE0 346 aaPredicted RBP8.74□□□□□ -1.01
VAPB-205ENST00000476395 C2CD2LO14523 706 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ALOX15BO15296 676 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 CST3P01034 146 aaPredicted RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 PABPC4LP0CB38 370 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 KRT5P13647 590 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 GARTP22102 1010 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 CDKN2BP42772 138 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ZBTB16Q05516 673 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 NFX1Q12986 1120 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 TAZQ16635 292 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 SLC45A4Q5BKX6 768 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ZNF677Q86XU0 584 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 IGDCC3Q8IVU1 814 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 MAP7D3Q8IWC1 876 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 MYO1HQ8N1T3 1032 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 RBM15BQ8NDT2 890 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 SLC35B2Q8TB61 432 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ZNF341Q9BYN7 854 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 KMT5AQ9NQR1 393 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 MKS1Q9NXB0 559 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ZNF180Q9UJW8 692 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ZNRF3Q9ULT6 936 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 hCG_1818297A0A087WSY0 165 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 FAM237BA0A1B0GVD1 139 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 TMEM221A6NGB7 291 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 TRIM64CA6NLI5 447 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 B2RBV5 119 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 G3V3G9 751 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 BUD23O43709 281 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 FOXD2O60548 495 aaPredicted RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 COL6A2P12110 1019 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 KRT4P19013 534 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 IL1R2P27930 398 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 MAN1A1P33908 653 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 PTPN7P35236 360 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ACOT2P49753 483 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 PSMD7P51665 324 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ADARP55265 1226 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 CUL2Q13617 745 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 BTG3Q14201 252 aaPredicted RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 STAT4Q14765 748 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 R3HDM1Q15032 1099 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 DCAF8Q5TAQ9 597 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 VSIG10LQ86VR7 867 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 RASSF3Q86WH2 238 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 FAM81BQ96LP2 452 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 TMEM120AQ9BXJ8 343 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 GRIP2Q9C0E4 1043 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 TAOK3Q9H2K8 898 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 TUBGCP4Q9UGJ1 667 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 DOLKQ9UPQ8 538 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 HEY1Q9Y5J3 304 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 GOLGA8SH3BPF8 625 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 GOLGA8MH3BSY2 632 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ESRRAP11474 423 aaPredicted RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 ATP5DP30049 168 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 NOP14P78316 857 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 IGBP1P78318 339 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 SLC25A11Q02978 314 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 BRDTQ58F21 947 aaPredicted RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 EFHC2Q5JST6 749 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 KLHDC10Q6PID8 442 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ABHD15Q6UXT9 468 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 CYP4V2Q6ZWL3 525 aaPredicted RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 RHOT1Q8IXI2 618 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ARHGAP18Q8N392 663 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.73□□□□□ -1.01
VAPB-205ENST00000476395 SLC16A10Q8TF71 515 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 DCAKDQ8WVC6 231 aa8.73□□□□□ -1.01
VAPB-205ENST00000476395 PRPF31Q8WWY3 499 aaKnown RBP8.73□□□□□ -1.01
VAPB-205ENST00000476395 NSL1Q96IY1 281 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms