RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 LAD1O00515 517 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 GNAO1P09471 354 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 YAP1P46937 504 aaKnown RBP9.27□□□□□ -0.92
COL6A3-210ENST00000473258 RGS6P49758 472 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 CCT8P50990 548 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 RAB5BP61020 215 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 PLCL1Q15111 1095 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 TSNQ15631 228 aaKnown RBP9.27□□□□□ -0.92
COL6A3-210ENST00000473258 CDC73Q6P1J9 531 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 FAM122CQ6P4D5 195 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 ZNF613Q6PF04 617 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 STRA8Q7Z7C7 330 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 MAGEB6Q8N7X4 407 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 GTPBP2Q9BX10 602 aaKnown RBP9.27□□□□□ -0.92
COL6A3-210ENST00000473258 GPBP1L1Q9HC44 474 aaPredicted RBP9.27□□□□□ -0.92
COL6A3-210ENST00000473258 MCM9Q9NXL9 1143 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 MAPRE3Q9UPY8 281 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 PCDHGA11Q9Y5H2 935 aa9.27□□□□□ -0.92
COL6A3-210ENST00000473258 A0A1B0GTH6 734 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 APOC1P02654 83 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 ASLP04424 464 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 RARGP13631 454 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 NSUN2Q08J23 767 aaKnown RBP eCLIP9.27□□□□□ -0.93
COL6A3-210ENST00000473258 TFCP2Q12800 502 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 PWP1Q13610 501 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 RWDD4Q6NW29 188 aaKnown RBP9.27□□□□□ -0.93
COL6A3-210ENST00000473258 DHFR2Q86XF0 187 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 TRPV1Q8NER1 839 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 CDK19Q9BWU1 502 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 LMCD1Q9NZU5 365 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 KCNE2Q9Y6J6 123 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 hCG_1642624A0A1W2PR95 340 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 TMEM114B3SHH9 223 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 GPAA1O43292 621 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 SNAP91O60641 907 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 SCGNO76038 276 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 UPP2O95045 317 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 THRBP10828 461 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 LRRC41Q15345 812 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 OLFML2AQ68BL7 652 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 C12orf56Q8IXR9 622 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 RTKN2Q8IZC4 609 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 MEIOBQ8N635 442 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 ZSWIM2Q8NEG5 633 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 MAFIPQ8WZ33 124 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 OXNAD1Q96HP4 312 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-210ENST00000473258 ARMT1Q9H993 441 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 XPR1Q9UBH6 696 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 NPIPA7E9PJI5 369 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 MGRN1O60291 552 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 NPIPA8P0DM63 369 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 ITGA3P26006 1051 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 OR2B6P58173 313 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 SLC25A24Q6NUK1 477 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 PMF1Q6P1K2 205 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 LINS1Q8NG48 757 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF564Q8TBZ8 553 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-210ENST00000473258 NSUN6Q8TEA1 469 aaKnown RBP9.27□□□□□ -0.93
COL6A3-210ENST00000473258 DPF3Q92784 378 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 RNF25Q96BH1 459 aaPredicted RBP9.27□□□□□ -0.93
COL6A3-210ENST00000473258 PRAM1Q96QH2 718 aa9.27□□□□□ -0.93
COL6A3-210ENST00000473258 CSPG5O95196 566 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PRLRP16471 622 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CAPZA2P47755 286 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 SCN1BQ07699 218 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 TTC39BQ5VTQ0 682 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 RESP18Q5W5W9 173 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 RNF43Q68DV7 783 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 TIPINQ9BVW5 301 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 GPAMQ9HCL2 828 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 SETD4Q9NVD3 440 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 NUDT5Q9UKK9 219 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CDH9Q9ULB4 789 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 SNX7Q9UNH6 387 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 SSU72P8A0A1W2PR75 194 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 K7ENM7 598 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 NCALDP61601 193 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CSNK2BP67870 215 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 ZNF654Q8IZM8 581 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 HAVCR1Q96D42 359 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 FERD3LQ96RJ6 166 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CHCHD6Q9BRQ6 235 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 YIPF2Q9BWQ6 316 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 KIAA1683Q9H0B3 1180 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 GGA1Q9UJY5 639 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 ZDHHC9Q9Y397 364 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 FAM172BPA6NC97 362 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 CCNT2O60583 730 aaKnown RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 ECDO95905 644 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 OSBPP22059 807 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 PIK3CGP48736 1102 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 OXCT1P55809 520 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 SHROOM1Q2M3G4 852 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 FAM98BQ52LJ0 330 aaKnown RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 LACTB2Q53H82 288 aaPredicted RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 METTL21CQ5VZV1 264 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 C3orf62Q6ZUJ4 267 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 ERI1Q8IV48 349 aaKnown RBP9.26□□□□□ -0.93
COL6A3-210ENST00000473258 RHOT1Q8IXI2 618 aa9.26□□□□□ -0.93
COL6A3-210ENST00000473258 TEX19Q8NA77 164 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms