RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TARSL2A2RTX5 802 aaKnown RBP13.43□□□□□ -0.26
VPS13D-205ENST00000473099 ZBBXA8MT70 800 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 NT5C1B-RDH14C9J2C7 533 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 HHLA1C9JL84 531 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 KRIT1O00522 736 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 TBC1D4O60343 1298 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 GJB5O95377 273 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 ZBED1O96006 694 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 SOD2P04179 222 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 PYGMP11217 842 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 CPB1P15086 417 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 PTPN7P35236 360 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 FLT3P36888 993 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 MATKP42679 507 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 DAOAP59103 153 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 TAS2R40P59535 323 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 YWHAZP63104 245 aaKnown RBP13.43□□□□□ -0.26
VPS13D-205ENST00000473099 HTRA4P83105 476 aaPredicted RBP13.43□□□□□ -0.26
VPS13D-205ENST00000473099 ADCY1Q08828 1119 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 GPR17Q13304 367 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 SMC1AQ14683 1233 aaKnown RBP13.43□□□□□ -0.26
VPS13D-205ENST00000473099 CCDC142Q17RM4 750 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 ERCC6LQ2NKX8 1250 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 PM20D1Q6GTS8 502 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 KIAA1841Q6NSI8 718 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 ZNF365Q70YC5 407 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 BEND5Q7L4P6 421 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 STRADAQ7RTN6 431 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 OTOP2Q7RTS6 562 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 C7orf61Q8IZ16 206 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 COLGALT1Q8NBJ5 622 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 LRRN4CLQ8ND94 238 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 PHOSPHO2Q8TCD6 241 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 BADQ92934 168 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 KHSRPQ92945 711 aaKnown RBP eCLIP13.43□□□□□ -0.26
VPS13D-205ENST00000473099 RUNDC3BQ96NL0 473 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 TMEM209Q96SK2 561 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 DDX23Q9BUQ8 820 aaKnown RBP13.43□□□□□ -0.26
VPS13D-205ENST00000473099 HERC2P3Q9BVR0 1158 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 POPDC2Q9HBU9 364 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 CHST7Q9NS84 486 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 HOMER3Q9NSC5 361 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 TMLHEQ9NVH6 421 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 COMMD8Q9NX08 183 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 HCSTQ9UBK5 93 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 MTRRQ9UBK8 725 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 EFR3BQ9Y2G0 817 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 INSL6Q9Y581 213 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 PCDHB12Q9Y5F1 795 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 ANAPC1Q9H1A4 1944 aa13.43□□□□□ -0.26
VPS13D-205ENST00000473099 PRPSAP2O60256 369 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 GRIK1P39086 918 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 SLC25A11Q02978 314 aaKnown RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 CREMQ03060 361 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 C2orf54Q08AI8 447 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 ZNF211Q13398 564 aaPredicted RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 PSMD5Q16401 504 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 SLC25A52Q3SY17 297 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 CCDC14Q49A88 953 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 BOLA3Q53S33 107 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 HABP4Q5JVS0 413 aaKnown RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 RTP2Q5QGT7 225 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 TMEM240Q5SV17 173 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 ZFYVE27Q5T4F4 411 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 C8orf74Q6P047 294 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 DDX53Q86TM3 631 aaKnown RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 VSIG1Q86XK7 387 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 CPNE8Q86YQ8 564 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 SLC13A5Q86YT5 568 aaPredicted RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 CCDC50Q8IVM0 306 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 FIBCD1Q8N539 461 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 TEKT4Q8WW24 435 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 HERVK_113Q902F9 699 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 CENPIQ92674 756 aaPredicted RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 DPF3Q92784 378 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 FAM149B1Q96BN6 582 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 PIWIL1Q96J94 861 aaKnown RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 SLC2A13Q96QE2 648 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 KCNK16Q96T55 309 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 ULBP1Q9BZM6 244 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 FBXO44Q9H4M3 255 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 SLITRK6Q9H5Y7 841 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 ABI2Q9NYB9 513 aaPredicted RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 PCDH10Q9P2E7 1040 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 HSFX1Q9UBD0 423 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 USP18Q9UMW8 372 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 SSX2IPQ9Y2D8 614 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 MRPL42Q9Y6G3 142 aaKnown RBP13.42□□□□□ -0.26
VPS13D-205ENST00000473099 USP3Q9Y6I4 520 aa13.42□□□□□ -0.26
VPS13D-205ENST00000473099 CAPN9O14815 690 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 FSCN2O14926 492 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 GRAP2O75791 330 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 RTN3O95197 1032 aaPredicted RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 TRUB2O95900 331 aaKnown RBP13.41□□□□□ -0.26
VPS13D-205ENST00000473099 LTFP02788 710 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 KRT1P04264 644 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 MIPP30301 263 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 GLUD2P49448 558 aa13.41□□□□□ -0.26
VPS13D-205ENST00000473099 RPL10AP62906 217 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms