RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PTPN13Q12923 2485 aa5.73□□□□□ -1.49
PTPN4-209ENST00000469511 DOPEY2Q9Y3R5 2298 aa5.73□□□□□ -1.49
PTPN4-209ENST00000469511 COL5A1P20908 1838 aaPredicted RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 KALRNO60229 2985 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 H0Y626 953 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 K7ERI5 159 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 OPHN1O60890 802 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 ADAM23O75077 832 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 CBFA2T3O75081 653 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 TRIM16O95361 564 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 KLF8O95600 359 aaPredicted RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 ATXN1LP0C7T5 689 aaKnown RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 FAM157BP0CG42 384 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 CXCL8P10145 99 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 EPB42P16452 691 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 PROZP22891 400 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 RPL9P32969 192 aaKnown RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 AARSP49588 968 aaKnown RBP eCLIP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 YARSP54577 528 aaKnown RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 EVCP57679 992 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 DMP1Q13316 513 aaPredicted RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 MTF1Q14872 753 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 ZBTB6Q15916 424 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 ZNF423Q2M1K9 1284 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 MGAT5BQ3V5L5 792 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 ZNF568Q3ZCX4 644 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 FBXO43Q4G163 708 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 SLC39A12Q504Y0 691 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 ARHGAP15Q53QZ3 475 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 PEAR1Q5VY43 1037 aaPredicted RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 LYSMD4Q5XG99 296 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 Q6ZNB5 142 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 TOGARAM2Q6ZUX3 1019 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 LPCAT2Q7L5N7 544 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 EFCAB13Q8IY85 973 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 TRIM22Q8IYM9 498 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 DAW1Q8N136 415 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 HDDC3Q8N4P3 179 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 IL17RCQ8NAC3 791 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 APPL2Q8NEU8 664 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 HMGB4Q8WW32 186 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 TNFRSF25Q93038 417 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 NUCKS1Q9H1E3 243 aaKnown RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 C2orf40Q9H1Z8 148 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 TDP1Q9NUW8 608 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 DUS2Q9NX74 493 aaKnown RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 MAFFQ9ULX9 164 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 MMP17Q9ULZ9 603 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 MAGED2Q9UNF1 606 aaPredicted RBP5.72□□□□□ -1.49
PTPN4-209ENST00000469511 ASB3Q9Y575 518 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 KCNMB2Q9Y691 235 aa5.72□□□□□ -1.49
PTPN4-209ENST00000469511 C2orf78A6NCI8 922 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 OR6C75A6NL08 312 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 LACTBL1A8MY62 500 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 TRIM24O15164 1050 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ATXN7O15265 892 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 EFSO43281 561 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 HCRTO43612 131 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 TLX3O43711 291 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 BAG4O95429 457 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 CTDNEP1O95476 244 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 SERPINF2P08697 491 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 HAPLN1P10915 354 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 XRCC6P12956 609 aaKnown RBP eCLIP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 FDPSP14324 419 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 SNRPBP14678 240 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 GCFC2P16383 781 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 GABRG2P18507 467 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 GRNP28799 593 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 CDC25CP30307 473 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 LRPAP1P30533 357 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 AVPR1AP37288 418 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 EIF2S3P41091 472 aaKnown RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 WASP42768 502 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 KIR2DL1P43626 348 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 NPTX2P47972 431 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ATXN3P54252 364 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 PEX3P56589 373 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 IRX6P78412 446 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 BNC1Q01954 994 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 GFPT1Q06210 699 aaPredicted RBP5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF33AQ06730 810 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 BFSP1Q12934 665 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 MAPK7Q13164 816 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 PTPAQ15257 358 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF77Q15935 545 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 CALCRLQ16602 461 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 DBN1Q16643 649 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 DUOXA1Q1HG43 343 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 OVOS1Q6IE37 1185 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 BLOC1S2Q6QNY1 142 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 XKR5Q6UX68 686 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 DSTYKQ6XUX3 929 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 RIPOR1Q6ZS17 1223 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 TMPRSS7Q7RTY8 843 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 ZNF605Q86T29 641 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 MON1AQ86VX9 555 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 MIB1Q86YT6 1006 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 NAXDQ8IW45 347 aa5.71□□□□□ -1.5
PTPN4-209ENST00000469511 SLFN12Q8IYM2 578 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms