RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 EBF3Q9H4W6 596 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 GKN1Q9NS71 199 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 DACT1Q9NYF0 836 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 KCND3Q9UK17 655 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 TBX20Q9UMR3 447 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 TMA7Q9Y2S6 64 aaKnown RBP5.59□□□□□ -1.51
HMGB1-207ENST00000468384 PCDHGA8Q9Y5G5 932 aa5.59□□□□□ -1.51
HMGB1-207ENST00000468384 KIAA1549LQ6ZVL6 1849 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 TLDC2A0PJX2 215 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 ARHGEF37A1IGU5 675 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 PMS2P1A4D2B8 440 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 MEI4A8MW99 385 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 SPATA31C2B4DYI2 1134 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 SGK1O00141 431 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 LAD1O00515 517 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 EREGO14944 169 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 TSPAN3O60637 253 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 STK10O94804 968 aaKnown RBP5.58□□□□□ -1.52
HMGB1-207ENST00000468384 ITGB3P05106 788 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 ATF4P18848 351 aaPredicted RBP5.58□□□□□ -1.52
HMGB1-207ENST00000468384 SLC16A2P36021 539 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 TFCP2Q12800 502 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 RAB33AQ14088 237 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 NEDD9Q14511 834 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 RRP12Q5JTH9 1297 aaKnown RBP5.58□□□□□ -1.52
HMGB1-207ENST00000468384 HGSNATQ68CP4 663 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 FUT10Q6P4F1 479 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 MTHFD1LQ6UB35 978 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 BTLAQ7Z6A9 289 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 SIRT2Q8IXJ6 389 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 ARL14Q8N4G2 192 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 ZNF276Q8N554 614 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 EID2Q8N6I1 236 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 DNAJB8Q8NHS0 232 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 BPIFB1Q8TDL5 484 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 NINJ1Q92982 152 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 POLR3CQ9BUI4 534 aaPredicted RBP5.58□□□□□ -1.52
HMGB1-207ENST00000468384 PLA2G12AQ9BZM1 189 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 ZSWIM4Q9H7M6 989 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 THG1LQ9NWX6 298 aaKnown RBP5.58□□□□□ -1.52
HMGB1-207ENST00000468384 OBP2AQ9NY56 170 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 CALCOCO1Q9P1Z2 691 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 TJP2Q9UDY2 1190 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 CYP8B1Q9UNU6 501 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 NEU2Q9Y3R4 380 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 PCDHA1Q9Y5I3 950 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 GPC6Q9Y625 555 aaPredicted RBP5.58□□□□□ -1.52
HMGB1-207ENST00000468384 POLEQ07864 2286 aa5.58□□□□□ -1.52
HMGB1-207ENST00000468384 UBR4Q5T4S7 5183 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 EFCAB7A8K855 629 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 K7EQS6 105 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 M0R082 166 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 GADD45BO75293 160 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-207ENST00000468384 ZNF217O75362 1048 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 GPR32O75388 356 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 ALX3O95076 343 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 TNFSF15O95150 251 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 THEGLP0DJG4 465 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 MYL4P12829 197 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 GJA4P35212 333 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 SPIRE1Q08AE8 756 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 PSMD5Q16401 504 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 ZRANB3Q5FWF4 1079 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 TRIM68Q6AZZ1 485 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 C14orf80Q86SX3 495 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 GALNT12Q8IXK2 581 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 COLGALT2Q8IYK4 626 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 CLASRPQ8N2M8 674 aaKnown RBP5.57□□□□□ -1.52
HMGB1-207ENST00000468384 ALLCQ8N6M5 410 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 C1orf127Q8N9H9 656 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 TXNDC5Q8NBS9 432 aaKnown RBP5.57□□□□□ -1.52
HMGB1-207ENST00000468384 MCUQ8NE86 351 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 ZNF417Q8TAU3 575 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 LNX1Q8TBB1 728 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-207ENST00000468384 SHKBP1Q8TBC3 707 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 GPRASP2Q96D09 838 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 ZNF587Q96SQ5 575 aaPredicted RBP5.57□□□□□ -1.52
HMGB1-207ENST00000468384 SLC12A9Q9BXP2 914 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 MAF1Q9H063 256 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 OSBPL2Q9H1P3 480 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 KBTBD4Q9NVX7 518 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 CNTN3Q9P232 1028 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 KANSL3Q9P2N6 904 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 TPCN1Q9ULQ1 816 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 PA2G4Q9UQ80 394 aaKnown RBP5.57□□□□□ -1.52
HMGB1-207ENST00000468384 TP53TG5Q9Y2B4 290 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 ANKRD6Q9Y2G4 727 aa5.57□□□□□ -1.52
HMGB1-207ENST00000468384 MYH4Q9Y623 1939 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 KLF8O95600 359 aaPredicted RBP5.56□□□□□ -1.52
HMGB1-207ENST00000468384 POMCP01189 267 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 HSPD1P10809 573 aaKnown RBP5.56□□□□□ -1.52
HMGB1-207ENST00000468384 ARSAP15289 507 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 ACP1P24666 158 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 ADSLP30566 484 aaPredicted RBP5.56□□□□□ -1.52
HMGB1-207ENST00000468384 OR1D2P34982 312 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 MEOX1P50221 254 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 AFF3P51826 1226 aaKnown RBP5.56□□□□□ -1.52
HMGB1-207ENST00000468384 MRPS21P82921 87 aaKnown RBP5.56□□□□□ -1.52
HMGB1-207ENST00000468384 INF2Q27J81 1249 aa5.56□□□□□ -1.52
HMGB1-207ENST00000468384 TSHZ3Q63HK5 1081 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms