RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 B3GALNT2Q8NCR0 500 aa18.79■□□□□ 0.6
COL7A1-205ENST00000465238 TTC8Q8TAM2 541 aa18.79■□□□□ 0.6
COL7A1-205ENST00000465238 MYCBPAPQ8TBZ2 947 aa18.79■□□□□ 0.6
COL7A1-205ENST00000465238 VPS16Q9H269 839 aa18.79■□□□□ 0.6
COL7A1-205ENST00000465238 DPEP3Q9H4B8 488 aa18.79■□□□□ 0.6
COL7A1-205ENST00000465238 CISHQ9NSE2 258 aa18.79■□□□□ 0.6
COL7A1-205ENST00000465238 RBM12Q9NTZ6 932 aaKnown RBP18.79■□□□□ 0.6
COL7A1-205ENST00000465238 RAB23Q9ULC3 237 aa18.79■□□□□ 0.6
COL7A1-205ENST00000465238 PAPSS2O95340 614 aaPredicted RBP18.78■□□□□ 0.6
COL7A1-205ENST00000465238 TNK2Q07912 1038 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 DGLUCYQ7Z3D6 616 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 ACOT1Q86TX2 421 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 DHX40Q8IX18 779 aaKnown RBP18.78■□□□□ 0.6
COL7A1-205ENST00000465238 CRYBG2Q8N1P7 616 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 SYNPOQ8N3V7 929 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 MAB21L3Q8N8X9 362 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 MRPS31Q92665 395 aaKnown RBP18.78■□□□□ 0.6
COL7A1-205ENST00000465238 MYLPFQ96A32 169 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 FUBP3Q96I24 572 aaKnown RBP eCLIP18.78■□□□□ 0.6
COL7A1-205ENST00000465238 ARID3AQ99856 593 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 NT5C1AQ9BXI3 368 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 SMG9Q9H0W8 520 aaKnown RBP18.78■□□□□ 0.6
COL7A1-205ENST00000465238 KIF9Q9HAQ2 790 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 DLL3Q9NYJ7 618 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 UXTQ9UBK9 157 aaPredicted RBP18.78■□□□□ 0.6
COL7A1-205ENST00000465238 GMEB2Q9UKD1 530 aa18.78■□□□□ 0.6
COL7A1-205ENST00000465238 CILPO75339 1184 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 ZNF18P17022 549 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 SLC9A1P19634 815 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 CYP2F1P24903 491 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 GPR15P49685 360 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 TPM4P67936 248 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 ORC1Q13415 861 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 CCINQ13939 588 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 PON2Q15165 354 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 CCDC142Q17RM4 750 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 CFAP221Q4G0U5 840 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 MON1AQ86VX9 555 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 USP13Q92995 863 aaPredicted RBP18.77■□□□□ 0.6
COL7A1-205ENST00000465238 TRMT2BQ96GJ1 504 aaKnown RBP18.77■□□□□ 0.6
COL7A1-205ENST00000465238 PCED1BQ96HM7 432 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 FAM83CQ9BQN1 747 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 GKN1Q9NS71 199 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 TDP1Q9NUW8 608 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 HMGXB4Q9UGU5 601 aa18.77■□□□□ 0.6
COL7A1-205ENST00000465238 LIMA1Q9UHB6 759 aaKnown RBP18.77■□□□□ 0.6
COL7A1-205ENST00000465238 MAGED2Q9UNF1 606 aaPredicted RBP18.77■□□□□ 0.6
COL7A1-205ENST00000465238 ATP8B3O60423 1300 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 NOL4O94818 638 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 SDHBP21912 280 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 CNR2P34972 360 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 COPB1P53618 953 aaKnown RBP18.76■□□□□ 0.59
COL7A1-205ENST00000465238 GCNT1Q02742 428 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 IQCB1Q15051 598 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 DDR2Q16832 855 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 ZNF394Q53GI3 561 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 FKBP15Q5T1M5 1219 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 LAIR1Q6GTX8 287 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 TRIM65Q6PJ69 517 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 Q6ZS52 159 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 RRAGAQ7L523 313 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 ARHGEF19Q8IW93 802 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 WHAMMQ8TF30 809 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 FAM81BQ96LP2 452 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 MYRFLQ96LU7 910 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 MED10Q9BTT4 135 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 CBX8Q9HC52 389 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 UBE2TQ9NPD8 197 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-205ENST00000465238 CCL26Q9Y258 94 aa18.76■□□□□ 0.59
COL7A1-205ENST00000465238 BDNFP23560 247 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 PON1P27169 355 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 MAGEA11P43364 429 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 LMNB2Q03252 620 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 RUNX3Q13761 415 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 ZNF268Q14587 947 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-205ENST00000465238 RSPO4Q2I0M5 234 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-205ENST00000465238 SDHAF4Q5VUM1 108 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 TXNDC8Q6A555 127 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 VSTM1Q6UX27 236 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 SCN4BQ8IWT1 228 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 TMEM176AQ96HP8 235 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 HEXIM2Q96MH2 286 aaKnown RBP18.75■□□□□ 0.59
COL7A1-205ENST00000465238 TWNKQ96RR1 684 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 B3GNT5Q9BYG0 378 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 ELOVL4Q9GZR5 314 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 HSD3B7Q9H2F3 369 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 PCDHB4Q9Y5E5 795 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 MYH10P35580 1976 aa18.75■□□□□ 0.59
COL7A1-205ENST00000465238 PTPRDP23468 1912 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 LRRC10BA6NIK2 292 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 PRR5-ARHGAP8B1AHC4 643 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 CHURC1-FNTBB4DL54 471 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 GOLGA6L19H0YKK7 550 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 K7ESF4 209 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 ATP1A3P13637 1013 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 HOXA6P31267 233 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 GRIK1P39086 918 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 FNTBP49356 437 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 MFAP3P55082 362 aa18.74■□□□□ 0.59
COL7A1-205ENST00000465238 ARHGAP8P85298 464 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms