RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 TTC16Q8NEE8 873 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 SPATA20Q8TB22 786 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 CD101Q93033 1021 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 FBXO32Q969P5 355 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 CHFRQ96EP1 664 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 CYFIP2Q96F07 1278 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 HNRNPABQ99729 332 aaKnown RBP7.72□□□□□ -1.17
PTPRF-210ENST00000463041 SMOQ99835 787 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 NT5C1AQ9BXI3 368 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 FAM124BQ9H5Z6 455 aaPredicted RBP7.72□□□□□ -1.17
PTPRF-210ENST00000463041 DMAP1Q9NPF5 467 aaPredicted RBP7.72□□□□□ -1.17
PTPRF-210ENST00000463041 TBC1D14Q9P2M4 693 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 NCDNQ9UBB6 729 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 SMG5Q9UPR3 1016 aaKnown RBP7.72□□□□□ -1.17
PTPRF-210ENST00000463041 SLC8A2Q9UPR5 921 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 WNT6Q9Y6F9 365 aa7.72□□□□□ -1.17
PTPRF-210ENST00000463041 A0A0A0MRY4 1105 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 LRP3O75074 770 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 EGFP01133 1207 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 RETP07949 1114 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 TRIM49P0CI25 452 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 TRIM49CP0CI26 452 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 EPB41P11171 864 aaKnown RBP7.71□□□□□ -1.18
PTPRF-210ENST00000463041 MBL2P11226 248 aaPredicted RBP7.71□□□□□ -1.18
PTPRF-210ENST00000463041 PPP1R2P41236 205 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 ASPAP45381 313 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 TUBP50607 506 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 SLC5A3P53794 718 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 PNOCQ13519 176 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 SIM2Q14190 667 aaPredicted RBP7.71□□□□□ -1.18
PTPRF-210ENST00000463041 LAIR1Q6GTX8 287 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 SPOPLQ6IQ16 392 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 ERMP1Q7Z2K6 904 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 C12orf29Q8N999 325 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 FBXL13Q8NEE6 735 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 ZMIZ2Q8NF64 920 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 SCAMP5Q8TAC9 235 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 SLC2A14Q8TDB8 520 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 TAS1R2Q8TE23 839 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 SMARCE1Q969G3 411 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 ELMO3Q96BJ8 720 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 OTUB2Q96DC9 234 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 TSG101Q99816 390 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 DUSP9Q99956 384 aaKnown RBP7.71□□□□□ -1.18
PTPRF-210ENST00000463041 UBXN6Q9BZV1 441 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 NIF3L1Q9GZT8 377 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 APOBEC3GQ9HC16 384 aaKnown RBP7.71□□□□□ -1.18
PTPRF-210ENST00000463041 PNPLA8Q9NP80 782 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 TLR8Q9NR97 1041 aaKnown RBP7.71□□□□□ -1.18
PTPRF-210ENST00000463041 RAB20Q9NX57 234 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 GMEB2Q9UKD1 530 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 PCDHA5Q9Y5H7 936 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 CPQQ9Y646 472 aa7.71□□□□□ -1.18
PTPRF-210ENST00000463041 CNOT1A5YKK6 2376 aaKnown RBP7.71□□□□□ -1.18
PTPRF-210ENST00000463041 MYO16Q9Y6X6 1858 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 PI4KAP42356 2102 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 EML5Q05BV3 1969 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 PRR5-ARHGAP8B1AHC4 643 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 COCHO43405 550 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 RNF40O75150 1001 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 CILPO75339 1184 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 BEST1O76090 585 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 FAM200BP0CF97 657 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 CCDC130P13994 396 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 EIF2DP41214 584 aaKnown RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 MAP3K7CLP57077 242 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 MRPS21P82921 87 aaKnown RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 ARHGAP8P85298 464 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 LRRC63Q05C16 580 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 DMWDQ09019 674 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 IFRD2Q12894 506 aaPredicted RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 STIM1Q13586 685 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 PUM1Q14671 1186 aaKnown RBP eCLIP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 DHCR24Q15392 516 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 PREPLQ4J6C6 727 aaPredicted RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 HEATR6Q6AI08 1181 aaKnown RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 ANKRD40Q6AI12 368 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 RHBDF2Q6PJF5 856 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 SYT13Q7L8C5 426 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 FILIP1Q7Z7B0 1213 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 ZC3H3Q8IXZ2 948 aaKnown RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 SMYD4Q8IYR2 804 aaPredicted RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 ZNF276Q8N554 614 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 WHAMMQ8TF30 809 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 SEMA4DQ92854 862 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 ACDQ96AP0 544 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 DHTKD1Q96HY7 919 aaPredicted RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 HEXIM2Q96MH2 286 aaKnown RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 DUSP16Q9BY84 665 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 MMRN2Q9H8L6 949 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 METTL14Q9HCE5 456 aaKnown RBP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.7□□□□□ -1.18
PTPRF-210ENST00000463041 KRT82Q9NSB4 513 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 C2orf42Q9NWW7 574 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 SMPD4Q9NXE4 827 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 CFAP97Q9P2B7 532 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 SCML2Q9UQR0 700 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 COQ4Q9Y3A0 265 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 SH3BP1Q9Y3L3 701 aa7.7□□□□□ -1.18
PTPRF-210ENST00000463041 THADAQ6YHU6 1953 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms