RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 DNAAF3Q8N9W5 541 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 CNPY3Q9BT09 278 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 RSAD1Q9HA92 442 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 MYO18AQ92614 2054 aaKnown RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 TARSP26639 723 aaKnown RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 SLC26A2P50443 739 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 CA9Q16790 459 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 MSS51Q4VC12 460 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 VSTM1Q6UX27 236 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 DSTYKQ6XUX3 929 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 GPR142Q7Z601 462 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 CTU1Q7Z7A3 348 aaKnown RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 HOMEZQ8IX15 550 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 C2orf69Q8N8R5 385 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 C12orf50Q8NA57 414 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 ATXN2LQ8WWM7 1075 aaKnown RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 TTC25Q96NG3 672 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 APOL2Q9BQE5 337 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 RNF39Q9H2S5 420 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 UBN1Q9NPG3 1134 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 IL1RAPL1Q9NZN1 696 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 PSMC3IPQ9P2W1 217 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 IGKV6D-21A0A0A0MT36 114 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 SOCS7O14512 581 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 CILPO75339 1184 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 F7P08709 466 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 YBX3P16989 372 aaKnown RBP eCLIP12.48□□□□□ -0.415e-7■□□□□ 9.7
SMPD4-213ENST00000454468 TFE3P19532 575 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 HUNKP57058 714 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 RNASELQ05823 741 aaKnown RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 CACNB2Q08289 660 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 KLF1Q13351 362 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 TAF1CQ15572 869 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 ANKRD20A3Q5VUR7 823 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 HEATR6Q6AI08 1181 aaKnown RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 DENND5BQ6ZUT9 1274 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 APBB1IPQ7Z5R6 666 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 APPL2Q8NEU8 664 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 AGR3Q8TD06 166 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 TMEM237Q96Q45 408 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 KLC2Q9H0B6 622 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 ACTR5Q9H9F9 607 aaPredicted RBP12.48□□□□□ -0.41
SMPD4-213ENST00000454468 PCDH9Q9HC56 1237 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 TMPRSS4Q9NRS4 437 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 PHTF1Q9UMS5 762 aa12.48□□□□□ -0.41
SMPD4-213ENST00000454468 CFAP69A5D8W1 941 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 M0QZ92 97 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 IGF2BP3O00425 579 aaKnown RBP eCLIP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 TSPAN1O60635 241 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 TRUB2O95900 331 aaKnown RBP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 EDNRBP24530 442 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 GJA5P36382 358 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 SULT1E1P49888 294 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 PDE1BQ01064 536 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 DPYSL3Q14195 570 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 MORF4L2Q15014 288 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 KBTBD12Q3ZCT8 623 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 PYROXD2Q8N2H3 581 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 TXLNGYQ9BZA5 131 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 KIAA1217Q5T5P2 1943 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 USP12O75317 370 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 EZRP15311 586 aaKnown RBP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 ABCG1P45844 678 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 GEMIN4P57678 1058 aaKnown RBP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 KCNJ2P63252 427 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 CCDC62Q6P9F0 684 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 CYB5D1Q6P9G0 228 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 PARP9Q8IXQ6 854 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 CPT1BQ92523 772 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 PRCCQ92733 491 aaPredicted RBP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 TINF2Q9BSI4 451 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 SNRNP25Q9BV90 132 aaKnown RBP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 ADAM7Q9H2U9 754 aa12.47□□□□□ -0.41
SMPD4-213ENST00000454468 G3BP2Q9UN86 482 aaKnown RBP12.47□□□□□ -0.41
SMPD4-213ENST00000454468 TRIM49D1C9J1S8 452 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 KCNK1O00180 336 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 COPEO14579 308 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 SNX3O60493 162 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 TMEM63AO94886 807 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 TROVE2P10155 538 aaKnown RBP eCLIP12.46□□□□□ -0.41
SMPD4-213ENST00000454468 ZNF268Q14587 947 aaPredicted RBP12.46□□□□□ -0.41
SMPD4-213ENST00000454468 GNASQ5JWF2 1037 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 RWDD4Q6NW29 188 aaKnown RBP12.46□□□□□ -0.41
SMPD4-213ENST00000454468 NOTUMQ6P988 496 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 TCP10LQ8TDR4 215 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 USP33Q8TEY7 942 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 DEPDC1BQ8WUY9 529 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 EDEM1Q92611 657 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 LPPQ93052 612 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 LRRC37BQ96QE4 947 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 ASB7Q9H672 318 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 UBP1Q9NZI7 540 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 HAO1Q9UJM8 370 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 ARL2BPQ9Y2Y0 163 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 DNAH12Q6ZR08 3092 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 TREHO43280 583 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 SRGAP2BP0DMP2 458 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 PYGBP11216 843 aa12.46□□□□□ -0.41
SMPD4-213ENST00000454468 GPD2P43304 727 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms