RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 IFRD2Q12894 506 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-202ENST00000452372 NFKBIBQ15653 356 aa21.07■□□□□ 0.96
COL9A3-202ENST00000452372 ZSCAN23Q3MJ62 389 aa21.07■□□□□ 0.96
COL9A3-202ENST00000452372 SLC44A4Q53GD3 710 aa21.07■□□□□ 0.96
COL9A3-202ENST00000452372 CMTM8Q8IZV2 173 aa21.07■□□□□ 0.96
COL9A3-202ENST00000452372 OVCA2Q8WZ82 227 aa21.07■□□□□ 0.96
COL9A3-202ENST00000452372 TSPAN16Q9UKR8 245 aa21.07■□□□□ 0.96
COL9A3-202ENST00000452372 MTF2Q9Y483 593 aaPredicted RBP21.07■□□□□ 0.96
COL9A3-202ENST00000452372 PATJQ8NI35 1801 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 ZNF840PA6NDX5 716 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 O00370 1275 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 CNGA2Q16280 664 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 TTC30AQ86WT1 665 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 MFSD6LQ8IWD5 586 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 TFAP2BQ92481 460 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 FBXO32Q969P5 355 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 FBXO44Q9H4M3 255 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 HESX1Q9UBX0 185 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 DNAJC12Q9UKB3 198 aa21.06■□□□□ 0.96
COL9A3-202ENST00000452372 FANCMQ8IYD8 2048 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 NCANO14594 1321 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 SHISA7A6NL88 538 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 KRT5P13647 590 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 PFKLP17858 780 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 AVPR1AP37288 418 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 SLC8A3P57103 927 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 IQCB1Q15051 598 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 STILQ15468 1287 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 ARHGAP44Q17R89 818 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 GOLGA7BQ2TAP0 167 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 FKBP15Q5T1M5 1219 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 LCLAT1Q6UWP7 414 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 VITQ6UXI7 678 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 APTXQ7Z2E3 356 aaKnown RBP21.05■□□□□ 0.96
COL9A3-202ENST00000452372 GPIHBP1Q8IV16 184 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 PDZD8Q8NEN9 1154 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 PJA1Q8NG27 643 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 SHC3Q92529 594 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 RSPRY1Q96DX4 576 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 ZSWIM1Q9BR11 485 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 TRPC7Q9HCX4 862 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 OBP2AQ9NY56 170 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 CHORDC1Q9UHD1 332 aaPredicted RBP21.05■□□□□ 0.96
COL9A3-202ENST00000452372 MIA3Q5JRA6 1907 aa21.05■□□□□ 0.96
COL9A3-202ENST00000452372 FRYLO94915 3013 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 HEPACAM2A8MVW5 462 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 PRAMEF12O95522 483 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 CAVIN2O95810 425 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 ATP1A3P13637 1013 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 PSMC3P17980 439 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 KIF11P52732 1056 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 BCAT1P54687 386 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 MLF2Q15773 248 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-202ENST00000452372 KLHDC7AQ5VTJ3 777 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 SNX30Q5VWJ9 437 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 GPRIN1Q7Z2K8 1008 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 MAML2Q8IZL2 1156 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-202ENST00000452372 CELF5Q8N6W0 485 aaKnown RBP21.04■□□□□ 0.96
COL9A3-202ENST00000452372 DEPDC1BQ8WUY9 529 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 NKD2Q969F2 451 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-202ENST00000452372 CYP2S1Q96SQ9 504 aa21.04■□□□□ 0.96
COL9A3-202ENST00000452372 TRMT61BQ9BVS5 477 aaKnown RBP21.04■□□□□ 0.96
COL9A3-202ENST00000452372 OTOGLQ3ZCN5 2332 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 TRAV19A0A0A6YYK7 116 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 KANSL1LA0AUZ9 987 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 C2orf78A6NCI8 922 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 BECN2A8MW95 431 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 DPYSL4O14531 572 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 USP17L7P0C7H9 530 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 ZDHHC11BP0C7U3 371 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 HDCP19113 662 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 BRD2P25440 801 aaKnown RBP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 PDE6CP51160 858 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 PDE4CQ08493 712 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 BST2Q10589 180 aaKnown RBP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 ZNF268Q14587 947 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 PKDCCQ504Y2 493 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 PIGZQ86VD9 579 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 UBA3Q8TBC4 463 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 USP13Q92995 863 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 SHDQ96IW2 340 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 LRRC3BQ96PB8 259 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 SLC22A12Q96S37 553 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 LSM14BQ9BX40 385 aaKnown RBP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 SMG9Q9H0W8 520 aaKnown RBP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 PLCB1Q9NQ66 1216 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 TDP1Q9NUW8 608 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 AJAP1Q9UKB5 411 aaPredicted RBP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.03■□□□□ 0.96
COL9A3-202ENST00000452372 SCML2Q9UQR0 700 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 USP3Q9Y6I4 520 aa21.03■□□□□ 0.96
COL9A3-202ENST00000452372 GPR179Q6PRD1 2367 aa21.02■□□□□ 0.96
COL9A3-202ENST00000452372 LGALS16A8MUM7 142 aa21.02■□□□□ 0.96
COL9A3-202ENST00000452372 FOXN3O00409 490 aaPredicted RBP21.02■□□□□ 0.96
COL9A3-202ENST00000452372 XPO1O14980 1071 aaKnown RBP21.02■□□□□ 0.96
COL9A3-202ENST00000452372 ABL1P00519 1130 aa21.02■□□□□ 0.96
COL9A3-202ENST00000452372 CALCAP01258 141 aa21.02■□□□□ 0.96
COL9A3-202ENST00000452372 SETSIPP0DME0 302 aa21.02■□□□□ 0.96
COL9A3-202ENST00000452372 CD72P21854 359 aa21.02■□□□□ 0.96
COL9A3-202ENST00000452372 RFX1P22670 979 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms