RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 CTDP1Q9Y5B0 961 aaPredicted RBP8.94□□□□□ -0.98
HPS4-206ENST00000439453 IGLV3-22A0A075B6J6 115 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 RBM47A0AV96 593 aaKnown RBP8.94□□□□□ -0.98
HPS4-206ENST00000439453 H3BRJ5 948 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 BANF1O75531 89 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 CYP3A4P08684 503 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 MYBPC3Q14896 1274 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 TRMT5Q32P41 509 aaKnown RBP8.94□□□□□ -0.98
HPS4-206ENST00000439453 NAT14Q8WUY8 206 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 PANX3Q96QZ0 392 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 MIS12Q9H081 205 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 TMEM206Q9H813 350 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 PREBQ9HCU5 417 aa8.94□□□□□ -0.98
HPS4-206ENST00000439453 MRPL11Q9Y3B7 192 aaKnown RBP8.94□□□□□ -0.98
HPS4-206ENST00000439453 PSMD10O75832 226 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 SH3BGRP55822 239 aaPredicted RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 PRKD1Q15139 912 aaPredicted RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 CFAP157Q5JU67 520 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ADGRD1Q6QNK2 874 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 C12orf56Q8IXR9 622 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 DNERQ8NFT8 737 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 EXD1Q8NHP7 514 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 FBXO27Q8NI29 283 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 SPIRE2Q8WWL2 714 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 CPA5Q8WXQ8 436 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ALKBH8Q96BT7 664 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 ACCSQ96QU6 501 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 CYTH2Q99418 400 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 NMUR2Q9GZQ4 415 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 RNF208Q9H0X6 261 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 EBF3Q9H4W6 596 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 PXMP2Q9NR77 195 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 PDGFCQ9NRA1 345 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 DNAAF2Q9NVR5 837 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 DNAJB4Q9UDY4 337 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 RPS6KL1Q9Y6S9 549 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 CLUHO75153 1309 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ARHGEF35A5YM69 484 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 GOLGA8IPA6NC78 632 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 GOLGA8JA6NMD2 632 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 USP1O94782 785 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ENO1P06733 434 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 ADRB2P07550 413 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 PABPC4LP0CB38 370 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 IMPDH2P12268 514 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 UNGP13051 313 aaPredicted RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 KRT5P13647 590 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ACTR3P61158 418 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 UBXN2AP68543 259 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 NKX3-2P78367 333 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 TFDP1Q14186 410 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 C2CD6Q53TS8 623 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 RNASEH2BQ5TBB1 312 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 ACAD11Q709F0 780 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ALYREFQ86V81 257 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 NME8Q8N427 588 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ALLCQ8N6M5 410 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 RBM15BQ8NDT2 890 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 MZB1Q8WU39 189 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 ELMO3Q96BJ8 720 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 NT5C1BQ96P26 610 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 DEFB118Q96PH6 123 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 PAFAH2Q99487 392 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 GALNT8Q9NY28 637 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 FETUBQ9UGM5 382 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 GNEQ9Y223 722 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 SEPT4O43236 478 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 OPHN1O60890 802 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 PIAS1O75925 651 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 CCNFP41002 786 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 HNRNPDQ14103 355 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 MFSD14CQ5VZR4 134 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 KAZNQ674X7 775 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 CCSAPQ6IQ19 270 aaPredicted RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 FBXO16Q8IX29 292 aaPredicted RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 DIS3LQ8TF46 1054 aaKnown RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 HIC2Q96JB3 615 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 CLPTM1LQ96KA5 538 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 HMX1Q9NP08 348 aaPredicted RBP8.93□□□□□ -0.98
HPS4-206ENST00000439453 PPM1HQ9ULR3 514 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 USTQ9Y2C2 406 aa8.93□□□□□ -0.98
HPS4-206ENST00000439453 LAMA3Q16787 3333 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 NFASCO94856 1347 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 FAM237BA0A1B0GVD1 139 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 MYADML2A6NDP7 307 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 A6NJR5 290 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 GOLGA8SH3BPF8 625 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 GOLGA8MH3BSY2 632 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 BUD23O43709 281 aaKnown RBP8.92□□□□□ -0.98
HPS4-206ENST00000439453 ADAMTS4O75173 837 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 TM7SF2O76062 418 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 ARIH2O95376 493 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 KRT10P13645 584 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 BGNP21810 368 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 SSTR1P30872 391 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 PHBP35232 272 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 CHSY1Q86X52 802 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 TREML1Q86YW5 311 aa8.92□□□□□ -0.98
HPS4-206ENST00000439453 RBM12BQ8IXT5 1001 aaKnown RBP8.92□□□□□ -0.98
HPS4-206ENST00000439453 ULK2Q8IYT8 1036 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms