RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 FGFBP2Q9BYJ0 223 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 ELOVL4Q9GZR5 314 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 ARRDC1-AS1Q9H2J1 176 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 MAGEF1Q9HAY2 307 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 SIX4Q9UIU6 781 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 MTMR6Q9Y217 621 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 MORC2Q9Y6X9 1032 aaPredicted RBP8.28□□□□□ -1.08
VPS50-204ENST00000438395 UBE4BO95155 1302 aa8.28□□□□□ -1.08
VPS50-204ENST00000438395 SDK1Q7Z5N4 2213 aa8.27□□□□□ -1.08
VPS50-204ENST00000438395 TSC2P49815 1807 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 COL4A2P08572 1712 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 A0A087X0B3 334 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 C2orf78A6NCI8 922 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 K7ELQ4 463 aaPredicted RBP8.27□□□□□ -1.09
VPS50-204ENST00000438395 GABRDO14764 452 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 ATP2C2O75185 946 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 TADA3O75528 432 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 RHOBTB1O94844 696 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 EPN2O95208 641 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 PFKLP17858 780 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 TGM1P22735 817 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 WARSP23381 471 aaKnown RBP8.27□□□□□ -1.09
VPS50-204ENST00000438395 GJA4P35212 333 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 GNL1P36915 607 aaPredicted RBP8.27□□□□□ -1.09
VPS50-204ENST00000438395 MPLP40238 635 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 ME1P48163 572 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 PPP3CCP48454 512 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 NASPP49321 788 aaPredicted RBP8.27□□□□□ -1.09
VPS50-204ENST00000438395 GALK1P51570 392 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 SNRPFP62306 86 aaKnown RBP8.27□□□□□ -1.09
VPS50-204ENST00000438395 IFRD2Q12894 506 aaPredicted RBP8.27□□□□□ -1.09
VPS50-204ENST00000438395 DMC1Q14565 340 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 ZNF77Q15935 545 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 CCDC142Q17RM4 750 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 WDR72Q3MJ13 1102 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 TDRD10Q5VZ19 366 aaKnown RBP8.27□□□□□ -1.09
VPS50-204ENST00000438395 PKN3Q6P5Z2 889 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 TRAPPC11Q7Z392 1133 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 KBTBD6Q86V97 674 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 TTC30AQ86WT1 665 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 NELFCDQ8IXH7 590 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 XXYLT1Q8NBI6 393 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 OR5B17Q8NGF7 314 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 GOLGA5Q8TBA6 731 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 MYCBPAPQ8TBZ2 947 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 CHFRQ96EP1 664 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 CHAMP1Q96JM3 812 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 SPATA17Q96L03 361 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 CYP2S1Q96SQ9 504 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 CGRRF1Q99675 332 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 TRIM9Q9C026 710 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 NACA2Q9H009 215 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 VPS45Q9NRW7 570 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 AGPAT3Q9NRZ7 376 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 C2orf42Q9NWW7 574 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 FAM13BQ9NYF5 915 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 ARHGAP26Q9UNA1 814 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 MAP4K5Q9Y4K4 846 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 PCDHGA5Q9Y5G8 931 aa8.27□□□□□ -1.09
VPS50-204ENST00000438395 OTOL1A6NHN0 477 aaPredicted RBP8.26□□□□□ -1.09
VPS50-204ENST00000438395 A8MXQ7 604 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 F8VP50 259 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 HCRTO43612 131 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 EXOC3O60645 756 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 CUTAO60888 179 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 PPP6R2O75170 966 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 ALDH1A2O94788 518 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 YEATS4O95619 227 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 ZNF806P0C7X5 589 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 P4HA1P13674 534 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 DGKEP52429 567 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 CREB5Q02930 508 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 PSMD6Q15008 389 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 SF3A2Q15428 464 aaKnown RBP8.26□□□□□ -1.09
VPS50-204ENST00000438395 CCDC6Q16204 474 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 ZNF699Q32M78 642 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 EML3Q32P44 896 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 USP39Q53GS9 565 aaKnown RBP8.26□□□□□ -1.09
VPS50-204ENST00000438395 WDR44Q5JSH3 913 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 FOXD4L5Q5VV16 416 aaPredicted RBP8.26□□□□□ -1.09
VPS50-204ENST00000438395 ANO7Q6IWH7 933 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 FAM171BQ6P995 826 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 SYT13Q7L8C5 426 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 HSCBQ8IWL3 235 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 CEP57L1Q8IYX8 460 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 LINC00301Q8NCQ3 95 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 PDZD8Q8NEN9 1154 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 KBTBD7Q8WVZ9 684 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 FOXD4L4Q8WXT5 416 aaPredicted RBP8.26□□□□□ -1.09
VPS50-204ENST00000438395 HPS3Q969F9 1004 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 SYAP1Q96A49 352 aaPredicted RBP8.26□□□□□ -1.09
VPS50-204ENST00000438395 PCED1BQ96HM7 432 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 TNIP3Q96KP6 325 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 SPACA7Q96KW9 195 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 CNTNAP3BQ96NU0 1288 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 SLC22A12Q96S37 553 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 PKMYT1Q99640 499 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 MED10Q9BTT4 135 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 CNTNAP3Q9BZ76 1288 aa8.26□□□□□ -1.09
VPS50-204ENST00000438395 CRTAC1Q9NQ79 661 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms