RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RIN3Q8TB24 985 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 OSCP1Q8WVF1 389 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 RNF38Q9H0F5 515 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 TLR8Q9NR97 1041 aaKnown RBP16.05■□□□□ 0.16
LIMS3-201ENST00000437679 SPATA6Q9NWH7 488 aaPredicted RBP16.05■□□□□ 0.16
LIMS3-201ENST00000437679 DUS2Q9NX74 493 aaKnown RBP16.05■□□□□ 0.16
LIMS3-201ENST00000437679 CPQQ9Y646 472 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 PATJQ8NI35 1801 aa16.05■□□□□ 0.16
LIMS3-201ENST00000437679 PIEZO1Q92508 2521 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 HHLA1C9JL84 531 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 LEFTY2O00292 366 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 OLFM2O95897 454 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 ZDHHC11BP0C7U3 371 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 ARSAP15289 507 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 CD19P15391 556 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 ACO1P21399 889 aaKnown RBP16.04■□□□□ 0.16
LIMS3-201ENST00000437679 ERCC5P28715 1186 aaPredicted RBP16.04■□□□□ 0.16
LIMS3-201ENST00000437679 RPS9P46781 194 aaKnown RBP16.04■□□□□ 0.16
LIMS3-201ENST00000437679 TUBP50607 506 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 AMPD2Q01433 879 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 GPRIN1Q7Z2K8 1008 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 DDX42Q86XP3 938 aaKnown RBP eCLIP16.04■□□□□ 0.16
LIMS3-201ENST00000437679 C1orf210Q8IVY1 113 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 FAM114A1Q8IWE2 563 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 CPA6Q8N4T0 437 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 LMO3Q8TAP4 145 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 MED15Q96RN5 788 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 NACA2Q9H009 215 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 INTS2Q9H0H0 1204 aaKnown RBP16.04■□□□□ 0.16
LIMS3-201ENST00000437679 LMAN1LQ9HAT1 526 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 HPS4Q9NQG7 708 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 FAM86C1Q9NVL1 165 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 SMPD4Q9NXE4 827 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 KIAA1257Q9ULG3 409 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 SCML2Q9UQR0 700 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 PCDHB4Q9Y5E5 795 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 WNT6Q9Y6F9 365 aa16.04■□□□□ 0.16
LIMS3-201ENST00000437679 MYO16Q9Y6X6 1858 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 VDRP11473 427 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 MTIF2P46199 727 aaKnown RBP16.03■□□□□ 0.16
LIMS3-201ENST00000437679 KIF11P52732 1056 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 LRRC32Q14392 662 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 GOLGA7BQ2TAP0 167 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 TMEM270Q6UE05 265 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 RRAGAQ7L523 313 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 ZNF687Q8N1G0 1237 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 UBR7Q8N806 425 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 KIAA1958Q8N8K9 716 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 ANKRD52Q8NB46 1076 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 GPT2Q8TD30 523 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 ATP2A3Q93084 1043 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 UBXN6Q9BZV1 441 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 THAP9Q9H5L6 903 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 HESX1Q9UBX0 185 aa16.03■□□□□ 0.16
LIMS3-201ENST00000437679 SLC9A3R1O14745 358 aaPredicted RBP16.02■□□□□ 0.16
LIMS3-201ENST00000437679 COCHO43405 550 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 LAMTOR5O43504 91 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 TLR5O60602 858 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 PAEPP09466 180 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 ZXDBP98169 803 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 GCNT1Q02742 428 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 NR1H3Q13133 447 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 FZD5Q13467 585 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 PON2Q15165 354 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 EML3Q32P44 896 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 CT47A1Q5JQC4 288 aaPredicted RBP16.02■□□□□ 0.16
LIMS3-201ENST00000437679 TXNDC11Q6PKC3 985 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 ARHGEF19Q8IW93 802 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 KAT5Q92993 513 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 EXOC4Q96A65 974 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 IER2Q9BTL4 223 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 CCSER2Q9H7U1 834 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 ECT2Q9H8V3 914 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 CFAP97Q9P2B7 532 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 TSPAN16Q9UKR8 245 aa16.02■□□□□ 0.16
LIMS3-201ENST00000437679 OTOL1A6NHN0 477 aaPredicted RBP16.01■□□□□ 0.15
LIMS3-201ENST00000437679 CYP26A1O43174 497 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 NFATC1O95644 943 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 CHRNB1P11230 501 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 BCAT1P54687 386 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 DGKKQ5KSL6 1271 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 CCDC186Q7Z3E2 898 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 PIGZQ86VD9 579 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 IRF2BP1Q8IU81 584 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 FAM81BQ96LP2 452 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 CHRDQ9H2X0 955 aa16.01■□□□□ 0.15
LIMS3-201ENST00000437679 A0A1W2PQH9 124 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 O00370 1275 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 XPO1O14980 1071 aaKnown RBP16■□□□□ 0.15
LIMS3-201ENST00000437679 MBD3O95983 291 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 ATP5C1P36542 298 aaKnown RBP16■□□□□ 0.15
LIMS3-201ENST00000437679 PGFP49763 221 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 PSEN1P49768 467 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 BST2Q10589 180 aaKnown RBP16■□□□□ 0.15
LIMS3-201ENST00000437679 GRSF1Q12849 480 aaKnown RBP eCLIP16■□□□□ 0.15
LIMS3-201ENST00000437679 MTAPQ13126 283 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 STILQ15468 1287 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 MAN2A1Q16706 1144 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 GBP6Q6ZN66 633 aa16■□□□□ 0.15
LIMS3-201ENST00000437679 TADA2BQ86TJ2 420 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms