RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 FAM91A1Q658Y4 838 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 C4orf22Q6V702 233 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 SH2D5Q6ZV89 423 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 SLC26A11Q86WA9 606 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP4-205ENST00000431357 TTC39CQ8N584 583 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 ZNF483Q8TF39 744 aaPredicted RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 SLC16A10Q8TF71 515 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 BTBD10Q9BSF8 475 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 HEY2Q9UBP5 337 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 NKX1-2Q9UD57 310 aaPredicted RBP11.78□□□□□ -0.52
USP4-205ENST00000431357 DCTN4Q9UJW0 460 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 ZNF180Q9UJW8 692 aa11.78□□□□□ -0.52
USP4-205ENST00000431357 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP4-205ENST00000431357 SOWAHBA6NEL2 793 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 KBTBD13C9JR72 458 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 GOLGA8RI6L899 631 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 KRT37O76014 449 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 GPD2P43304 727 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 PSMC4P43686 418 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 RAP1GAPP47736 663 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 CDH6P55285 790 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 EN1Q05925 392 aaPredicted RBP11.77□□□□□ -0.52
USP4-205ENST00000431357 FAAP100Q0VG06 881 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 BLMHQ13867 455 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 KBTBD12Q3ZCT8 623 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 ILDR2Q71H61 639 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 ZNF513Q8N8E2 541 aaPredicted RBP11.77□□□□□ -0.52
USP4-205ENST00000431357 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.77□□□□□ -0.52
USP4-205ENST00000431357 SKA1Q96BD8 255 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 FAF2Q96CS3 445 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 RTP4Q96DX8 246 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 KLF6Q99612 283 aaPredicted RBP11.77□□□□□ -0.52
USP4-205ENST00000431357 IQCGQ9H095 443 aaKnown RBP11.77□□□□□ -0.52
USP4-205ENST00000431357 SUDS3Q9H7L9 328 aaPredicted RBP11.77□□□□□ -0.52
USP4-205ENST00000431357 SIX4Q9UIU6 781 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 KIAA1257Q9ULG3 409 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 PPP2R3BQ9Y5P8 575 aa11.77□□□□□ -0.52
USP4-205ENST00000431357 A0A0G2JND7 137 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 H7C0C1 242 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 INO80B-WBP1J3KQ70 363 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 M0QYV0 167 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 COPEO14579 308 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 PRPSAP2O60256 369 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 SNRPAP09012 282 aaKnown RBP11.77□□□□□ -0.53
USP4-205ENST00000431357 TGM2P21980 687 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 GCKP35557 465 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 ATP5OP48047 213 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 SLC26A2P50443 739 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 CDH8P55286 799 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 ZBTB16Q05516 673 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 OVGP1Q12889 678 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 FAM102AQ5T9C2 384 aaPredicted RBP11.77□□□□□ -0.53
USP4-205ENST00000431357 C4orf50Q6ZRC1 276 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 LRRC6Q86X45 466 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 IGDCC3Q8IVU1 814 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 LRRC71Q8N4P6 559 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 C1orf127Q8N9H9 656 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 USP6NLQ92738 828 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 LRRC39Q96DD0 335 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 PTCD3Q96EY7 689 aaKnown RBP11.77□□□□□ -0.53
USP4-205ENST00000431357 SERAC1Q96JX3 654 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 RNF157Q96PX1 679 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 GPR20Q99678 358 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 TMEM120AQ9BXJ8 343 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 NFKBIZQ9BYH8 718 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 INO80BQ9C086 356 aaPredicted RBP11.77□□□□□ -0.53
USP4-205ENST00000431357 ELOVL4Q9GZR5 314 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 SDCBP2Q9H190 292 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 CDT1Q9H211 546 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 MMADHCQ9H3L0 296 aaPredicted RBP11.77□□□□□ -0.53
USP4-205ENST00000431357 DENND2DQ9H6A0 471 aaPredicted RBP11.77□□□□□ -0.53
USP4-205ENST00000431357 CNTN3Q9P232 1028 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 STOML1Q9UBI4 398 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 RPS6KL1Q9Y6S9 549 aa11.77□□□□□ -0.53
USP4-205ENST00000431357 ZBTB42B2RXF5 422 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 PYGBP11216 843 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 MAGEA6P43360 314 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 OSTNP61366 133 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 CDK18Q07002 472 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 STILQ15468 1287 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 TAF5Q15542 800 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 KYAT1Q16773 422 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 TSNAXIP1Q2TAA8 658 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 BOLA3Q53S33 107 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 ANGEL2Q5VTE6 544 aaKnown RBP11.76□□□□□ -0.53
USP4-205ENST00000431357 EEF1DP3Q658K8 133 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 CCDC62Q6P9F0 684 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 LMNTD2Q8IXW0 634 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 ARHGAP24Q8N264 748 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 TAB3Q8N5C8 712 aaPredicted RBP11.76□□□□□ -0.53
USP4-205ENST00000431357 DDX51Q8N8A6 666 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP4-205ENST00000431357 KCNV2Q8TDN2 545 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 TEKT4Q8WW24 435 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 PTPRN2Q92932 1015 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 TTC17Q96AE7 1141 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 FAM111AQ96PZ2 611 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 CADM1Q9BY67 442 aaKnown RBP11.76□□□□□ -0.53
USP4-205ENST00000431357 ASB7Q9H672 318 aa11.76□□□□□ -0.53
USP4-205ENST00000431357 KCNK13Q9HB14 408 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms