RNA–Protein interactions for RNA: ENST00000429411.5

HPS4-205, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 3,492 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-205ENST00000429411 TRIM56Q9BRZ2 755 aaKnown RBP8.4□□□□□ -1.06
HPS4-205ENST00000429411 SMYD2Q9NRG4 433 aa8.4□□□□□ -1.06
HPS4-205ENST00000429411 DDX56Q9NY93 547 aaKnown RBP8.4□□□□□ -1.06
HPS4-205ENST00000429411 RGPD3A6NKT7 1758 aaPredicted RBP8.4□□□□□ -1.07
HPS4-205ENST00000429411 RGPD4Q7Z3J3 1758 aa8.4□□□□□ -1.07
HPS4-205ENST00000429411 CNTNAP1P78357 1384 aa8.4□□□□□ -1.07
HPS4-205ENST00000429411 ATRNL1Q5VV63 1379 aa8.4□□□□□ -1.07
HPS4-205ENST00000429411 hCG_1818297A0A087WSY0 165 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 TMEM191CA6NGB0 347 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 B2RBV5 119 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 PDGFRBP09619 1106 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 MMP8P22894 467 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 ADORA2BP29275 332 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 MIPP30301 263 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 ATXN3P54252 364 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 YWHAEP62258 255 aaKnown RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 CRADDP78560 199 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 PTPN20Q4JDL3 420 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 MSS51Q4VC12 460 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 C10orf62Q5T681 223 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 ATF7IP2Q5U623 682 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 FAM83AQ86UY5 434 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 MAP7D3Q8IWC1 876 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 TNS4Q8IZW8 715 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 C12orf50Q8NA57 414 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 MIEF2Q96C03 454 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 AGAP3Q96P47 875 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 THTPAQ9BU02 230 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 TMEM120AQ9BXJ8 343 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 CYP39A1Q9NYL5 469 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 RABL2AQ9UBK7 228 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 HESX1Q9UBX0 185 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 STRIP2Q9ULQ0 834 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 TRIM17Q9Y577 477 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 LOC100653049A0A140TA62 436 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 FAM237BA0A1B0GVD1 139 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 A6NJR5 290 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 KRT34O76011 436 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 KRT37O76014 449 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 PGM1P36871 562 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 MGAT5Q09328 741 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 THOC5Q13769 683 aaKnown RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 CHI3L2Q15782 390 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 EEF1DP3Q658K8 133 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 NAIF1Q69YI7 327 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 NDUFAF2Q8N183 169 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 CACTIN-AS1Q8N1I8 211 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 AGGF1Q8N302 714 aaeCLIP8.39□□□□□ -1.07
HPS4-205ENST00000429411 TMEM109Q9BVC6 243 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 ASCC2Q9H1I8 757 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 HOXC10Q9NYD6 342 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 ARHGAP28Q9P2N2 729 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 NKX1-2Q9UD57 310 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 ZMYND8Q9ULU4 1186 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 USP18Q9UMW8 372 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 SNX9Q9Y5X1 595 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 CAPN9O14815 690 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 OGTO15294 1046 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 LYPLA2O95372 231 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 CYP1A1P04798 512 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 FAM200BP0CF97 657 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 LCP1P13796 627 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 FKBP1AP62942 108 aaKnown RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 LAMTOR4Q0VGL1 99 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 IFRD2Q12894 506 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 PLEKHA7Q6IQ23 1121 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 EFCAB12Q6NXP0 572 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 B3GNT9Q6UX72 402 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 PCGF5Q86SE9 256 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 TTC7BQ86TV6 843 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 RSPH3Q86UC2 560 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 TTC13Q8NBP0 860 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 SEPT1Q8WYJ6 367 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 NAF1Q96HR8 494 aaKnown RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 CPXM1Q96SM3 734 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 PORCNQ9H237 461 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 VPS11Q9H270 941 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 ZNF395Q9H8N7 513 aaPredicted RBP8.39□□□□□ -1.07
HPS4-205ENST00000429411 PCDH9Q9HC56 1237 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 ASNSD1Q9NWL6 643 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 SENP1Q9P0U3 644 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 DLGAP2Q9P1A6 1054 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 COL24A1Q17RW2 1714 aa8.39□□□□□ -1.07
HPS4-205ENST00000429411 VTNP04004 478 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 UBA1P22314 1058 aaKnown RBP8.38□□□□□ -1.07
HPS4-205ENST00000429411 SERPINB6P35237 376 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 NUMBP49757 651 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 RHBDF2Q6PJF5 856 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 FBXO16Q8IX29 292 aaPredicted RBP8.38□□□□□ -1.07
HPS4-205ENST00000429411 TMEM192Q8IY95 271 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 C12orf29Q8N999 325 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 FAM13CQ8NE31 585 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 RXFP2Q8WXD0 754 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 HAPLN2Q9GZV7 340 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 FIS1Q9Y3D6 152 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 MEI4A8MW99 385 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 CYB561D2O14569 222 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 ADCY3O60266 1144 aa8.38□□□□□ -1.07
HPS4-205ENST00000429411 EDF1O60869 148 aaKnown RBP8.38□□□□□ -1.07
HPS4-205ENST00000429411 COQ9O75208 318 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms