RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 TMEM132DQ14C87 1099 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NR6A1Q15406 480 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NR0B2Q15466 257 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 IGFBP7Q16270 282 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PRAMEF14Q5SWL7 426 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 RNF187Q5TA31 235 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TRAF7Q6Q0C0 670 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CISD2Q8N5K1 135 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DTX3Q8N9I9 347 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 BANPQ8N9N5 519 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DNAAF3Q8N9W5 541 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TXNDC5Q8NBS9 432 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ESR2Q92731 530 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 UCN3Q969E3 161 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 RBM12Q9NTZ6 932 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 WDR35Q9P2L0 1181 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TJP2Q9UDY2 1190 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 RABGEF1Q9UJ41 708 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MINPP1Q9UNW1 487 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 GDAQ9Y2T3 454 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 COLEC10Q9Y6Z7 277 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ITSN2Q9NZM3 1697 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PI4KAP2A4QPH2 592 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 A8MUI8 341 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 HEPACAM2A8MVW5 462 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 FPGTO14772 594 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TDP2O95551 362 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 INHBBP09529 407 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PLCG1P19174 1290 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DPP4P27487 766 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MAT2AP31153 395 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SOX5P35711 763 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 HYAL1Q12794 435 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SRSF5Q13243 272 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ANKRD1Q15327 319 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NFKBIBQ15653 356 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 IFI16Q16666 785 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SLC9C2Q5TAH2 1124 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF746Q6NUN9 644 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 RINLQ6ZS11 566 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 BEND4Q6ZU67 534 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 LAPTM4BQ86VI4 370 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 HID1Q8IV36 788 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DIS3L2Q8IYB7 885 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ELOA2Q8IYF1 753 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 GRAMD1CQ8IYS0 662 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CARFQ8N187 725 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PI4KAP1Q8N8J0 262 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NAT16Q8N8M0 369 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 FAM46DQ8NEK8 389 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 USP13Q92995 863 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SEMA3CQ99985 751 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TACO1Q9BSH4 297 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ISCA1Q9BUE6 129 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TRIM62Q9BVG3 475 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 OSBPL1AQ9BXW6 950 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PLCB1Q9NQ66 1216 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CACNA2D2Q9NY47 1150 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 FBXL5Q9UKA1 691 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NOX1Q9Y5S8 564 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 A0A0G2JLL6 359 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ARHGEF35A5YM69 484 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 FAM221BA6H8Z2 402 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ARGFXA6NJG6 315 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 FAM155AB1AL88 458 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SNAP23O00161 211 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MDM4O15151 490 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CETN3O15182 167 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MAP3K6O95382 1288 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PCCAP05165 728 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ALPIP09923 528 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MSL3P1P0C860 447 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 LAMP2P13473 410 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 GNLYP22749 145 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 RBMXP38159 391 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NAMPTP43490 491 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NAP1L1P55209 391 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SKP1P63208 163 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 OCA2Q04671 838 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CUL4AQ13619 759 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PCBP1Q15365 356 aaKnown RBP eCLIP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TPD52L1Q16890 204 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF528Q3MIS6 628 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 SOHLH1Q5JUK2 328 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TCHHL1Q5QJ38 904 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 DACT2Q5SW24 774 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ZNF618Q5T7W0 954 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TSHZ1Q6ZSZ6 1077 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 PRRT2Q7Z6L0 340 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 RELL1Q8IUW5 271 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CYP4X1Q8N118 509 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TBC1D19Q8N5T2 526 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 FAF2Q96CS3 445 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 NAP1L4Q99733 375 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 VCPKMTQ9H867 229 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 LRRC4Q9HBW1 653 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 MRPL40Q9NQ50 206 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 CUEDC1Q9NWM3 386 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 ZDHHC7Q9NXF8 308 aa2.89□□□□□ -1.95
CCDC88A-205ENST00000426576 TTLL3Q9Y4R7 772 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms