RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 ATP11CQ8NB49 1132 aa13.96□□□□□ -0.18
USP42-203ENST00000426246 EXD1Q8NHP7 514 aa13.96□□□□□ -0.18
USP42-203ENST00000426246 MIEF2Q96C03 454 aa13.96□□□□□ -0.18
USP42-203ENST00000426246 MOCOSQ96EN8 888 aa13.96□□□□□ -0.18
USP42-203ENST00000426246 CPXM1Q96SM3 734 aa13.96□□□□□ -0.18
USP42-203ENST00000426246 MMP19Q99542 508 aa13.96□□□□□ -0.18
USP42-203ENST00000426246 BRCA2P51587 3418 aa13.96□□□□□ -0.18
USP42-203ENST00000426246 PDHXO00330 501 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 HCRTO43612 131 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 MIPP30301 263 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 GEMIN4P57678 1058 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 LMNB2Q03252 620 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 NR1H3Q13133 447 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 KPNB1Q14974 876 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 CFAP157Q5JU67 520 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 DSTYKQ6XUX3 929 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 OR6B3Q8NGW1 331 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 TMC2Q8TDI7 906 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 NLRP7Q8WX94 980 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 CENPTQ96BT3 561 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 PIWIL1Q96J94 861 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 MFSD14AQ96MC6 490 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 NTPCRQ9BSD7 190 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 RPF1Q9H9Y2 349 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 GBA2Q9HCG7 927 aaPredicted RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 TXNDC16Q9P2K2 825 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 SLC12A4Q9UP95 1085 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 SNX9Q9Y5X1 595 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 GOLGA4Q13439 2230 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 CAPN9O14815 690 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 CREB3O43889 395 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 TMEM63AO94886 807 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 UNC5CO95185 931 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 C4BPAP04003 597 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 POLR2BP30876 1174 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 MSX2P35548 267 aaPredicted RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 VCPP55072 806 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 BCAR1P56945 870 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 BNIP1Q12981 228 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 ACOT1Q86TX2 421 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 GBP7Q8N8V2 638 aaPredicted RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 FAM13CQ8NE31 585 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 ARL8BQ9NVJ2 186 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 KLK14Q9P0G3 267 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 PRRC2BQ5JSZ5 2229 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 TGFB3P10600 412 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 FGFR1P11362 822 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 SOX11P35716 441 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 IGDCC3Q8IVU1 814 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 SPATA33Q96N06 139 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 ZNF570Q96NI8 536 aa13.95□□□□□ -0.18
USP42-203ENST00000426246 ZC3H7BQ9UGR2 993 aaKnown RBP13.95□□□□□ -0.18
USP42-203ENST00000426246 ZNF236Q9UL36 1845 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 TP73O15350 636 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 DKC1O60832 514 aaKnown RBP eCLIP13.94□□□□□ -0.18
USP42-203ENST00000426246 NPTXRO95502 500 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 ITGBL1O95965 494 aaPredicted RBP13.94□□□□□ -0.18
USP42-203ENST00000426246 CALB1P05937 261 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 GHRP10912 638 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 PSMD6Q15008 389 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 CHI3L2Q15782 390 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 LACTB2Q53H82 288 aaPredicted RBP13.94□□□□□ -0.18
USP42-203ENST00000426246 NDUFAF2Q8N183 169 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 TMEM120AQ9BXJ8 343 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 VPS11Q9H270 941 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 CFLARO15519 480 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 NFICP08651 508 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 GRIA1P42261 906 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 ROR1Q01973 937 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 CENPCQ03188 943 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 SPRYD7Q5W111 196 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 BZW1Q7L1Q6 419 aaKnown RBP13.94□□□□□ -0.18
USP42-203ENST00000426246 ANKRD23Q86SG2 305 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 ZCCHC9Q8N567 271 aaKnown RBP13.94□□□□□ -0.18
USP42-203ENST00000426246 RNF148Q8N7C7 305 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 NIF3L1Q9GZT8 377 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 LAMA3Q16787 3333 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 HTTP42858 3142 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 NEMP1O14524 444 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 PRPF39Q86UA1 669 aaKnown RBP13.94□□□□□ -0.18
USP42-203ENST00000426246 NUDCD3Q8IVD9 361 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 LMNTD2Q8IXW0 634 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 VTI1AQ96AJ9 217 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 TWNKQ96RR1 684 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 DENND2DQ9H6A0 471 aaPredicted RBP13.94□□□□□ -0.18
USP42-203ENST00000426246 MORF4L1Q9UBU8 362 aa13.94□□□□□ -0.18
USP42-203ENST00000426246 DGKIO75912 1065 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 DCTN3O75935 186 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 USP1O94782 785 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 CCND1P24385 295 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 RBL1P28749 1068 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 SERPINB6P35237 376 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 PGM1P36871 562 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 CAV1Q03135 178 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 SLFN12LQ6IEE8 588 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 EFCAB12Q6NXP0 572 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 TMEM154Q6P9G4 183 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 CRELD2Q6UXH1 353 aaPredicted RBP13.93□□□□□ -0.18
USP42-203ENST00000426246 ENOSF1Q7L5Y1 443 aa13.93□□□□□ -0.18
USP42-203ENST00000426246 C12orf56Q8IXR9 622 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms