RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LRRC43Q8N309 656 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 ANKLE1Q8NAG6 615 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 CASKIN2Q8WXE0 1202 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 FUBP3Q96I24 572 aaKnown RBP eCLIP8.77□□□□□ -1.01
USP54-203ENST00000418501 SDCBP2Q9H190 292 aa8.77□□□□□ -1.01
USP54-203ENST00000418501 TRMT13Q9NUP7 481 aaKnown RBP8.77□□□□□ -1.01
USP54-203ENST00000418501 HACD1B0YJ81 288 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 TMEM189-UBE2V1I3L0A0 370 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 APOC4-APOC2K7ER74 178 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 MDM4O15151 490 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 PSMD3O43242 534 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 APOC2P02655 101 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 RARAP10276 462 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 KDELR1P24390 212 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 MATKP42679 507 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 ALDH7A1P49419 539 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 PMS2P54278 862 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 MRPS5P82675 430 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 PRPSAP1Q14558 356 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 DSC3Q14574 896 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 SEPT7Q16181 437 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 INTS6LQ5JSJ4 861 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 ZNF771Q7L3S4 317 aaPredicted RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 FAM35AQ86V20 835 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 LRRN4CLQ8ND94 238 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 SLC35F5Q8WV83 523 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 TMEM40Q8WWA1 233 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 C1orf54Q8WWF1 131 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 ZMAT2Q96NC0 199 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 ROPN1BQ9BZX4 212 aaPredicted RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 CNOT10Q9H9A5 744 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 ROPN1Q9HAT0 212 aaPredicted RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 PCDH9Q9HC56 1237 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 VPS18Q9P253 973 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 DOCK5Q9H7D0 1870 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 MAP2K7O14733 419 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 FANCGO15287 622 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 POLR3GO15318 223 aaPredicted RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 CYP11A1P05108 521 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 MIPP30301 263 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 PDK1Q15118 436 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 PDIK1LQ8N165 341 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 DHX35Q9H5Z1 703 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 DMGDHQ9UI17 866 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 TPX2Q9ULW0 747 aaKnown RBP8.76□□□□□ -1.01
USP54-203ENST00000418501 HPCAL4Q9UM19 191 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 SPDYE4A6NLX3 237 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 CST8O60676 142 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 SPAG6O75602 509 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 ATP11AP98196 1134 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 ORC1Q13415 861 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 KRT71Q3SY84 523 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 CEP85LQ5SZL2 805 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 ANKS3Q6ZW76 656 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 PIGZQ86VD9 579 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 DNAAF5Q86Y56 855 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 PRELID2Q8N945 189 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 CEP295NLQ96MC4 621 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 DEFB118Q96PH6 123 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP54-203ENST00000418501 SIP14410 1827 aa8.76□□□□□ -1.01
USP54-203ENST00000418501 hCG_1818297A0A087WSY0 165 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 C2CD4BA6NLJ0 364 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 F8VP50 259 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 APOEP02649 317 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ITGAVP06756 1048 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 PFKMP08237 780 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 SRGAP2BP0DMP2 458 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 AARSP49588 968 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP54-203ENST00000418501 SLC20A2Q08357 652 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 MORF4L2Q15014 288 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 WNT8BQ93098 351 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ELMO3Q96BJ8 720 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 TOX2Q96NM4 488 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ZIC5Q96T25 663 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 DDX23Q9BUQ8 820 aaKnown RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 SMARCAL1Q9NZC9 954 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 MCM3APO60318 1980 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 RGS16O15492 202 aaPredicted RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 CCDC130P13994 396 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CPB1P15086 417 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ELF1P32519 619 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 TRIM32Q13049 653 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 XRCC4Q13426 336 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 VEPH1Q14D04 833 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 SLC25A52Q3SY17 297 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CTXN3Q4LDR2 81 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 DCAF6Q58WW2 860 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 IZUMO3Q5VZ72 239 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ITPRIPL1Q6GPH6 555 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CCSAPQ6IQ19 270 aaPredicted RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 LRRC31Q6UY01 552 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ARHGEF18Q6ZSZ5 1173 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 CCDC117Q8IWD4 279 aaPredicted RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 SLC43A3Q8NBI5 491 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 FAM84AQ96KN4 292 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 DDX50Q9BQ39 737 aaKnown RBP8.75□□□□□ -1.01
USP54-203ENST00000418501 RNF39Q9H2S5 420 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 HIPK3Q9H422 1215 aa8.75□□□□□ -1.01
USP54-203ENST00000418501 ABCC13Q9NSE7 274 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 189.1 ms