RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 HELQQ8TDG4 1101 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 ZNF669Q96BR6 464 aaPredicted RBP11.63□□□□□ -0.55
PTPRF-204ENST00000412568 DCLK3Q9C098 648 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 CNTNAP2Q9UHC6 1331 aa11.63□□□□□ -0.55
PTPRF-204ENST00000412568 TCRBV7S2A1N4TA0A589 114 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 C3orf70A6NLC5 250 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 DIAPH2O60879 1101 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 SSTR1P30872 391 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 ALDH7A1P49419 539 aaKnown RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 NOMO3P69849 1222 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 MMRN1Q13201 1228 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 TAF1BQ53T94 588 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 NPNTQ6UXI9 565 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 PPIL6Q8IXY8 311 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 UPF1Q92900 1129 aaKnown RBP eCLIP11.62□□□□□ -0.551e-6■■■■■ 34.2
PTPRF-204ENST00000412568 SENP8Q96LD8 212 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 KIAA1257Q9ULG3 409 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 COG5Q9UP83 839 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 TRIM17Q9Y577 477 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 NUP188Q5SRE5 1749 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 FAM47DPA6NHR8 397 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 RBAK-RBAKDNI3L0D1 243 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 KRT4P19013 534 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 BST2Q10589 180 aaKnown RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 EFEMP1Q12805 493 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 VEPH1Q14D04 833 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 CCNG2Q16589 344 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 DUSP28Q4G0W2 176 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 ITPRIPL1Q6GPH6 555 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 OVOS1Q6IE37 1185 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 TAF2Q6P1X5 1199 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 EFHBQ8N7U6 833 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 ECT2Q9H8V3 914 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 KLC4Q9NSK0 619 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 USP15Q9Y4E8 981 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 MAFBQ9Y5Q3 323 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 DCTN3O75935 186 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 JCHAINP01591 159 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 USP17L7P0C7H9 530 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 CD52P31358 61 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 OVGP1Q12889 678 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 CTXN3Q4LDR2 81 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 FASTKD1Q53R41 847 aaKnown RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 PCSK9Q8NBP7 692 aaKnown RBP11.62□□□□□ -0.55
PTPRF-204ENST00000412568 RMDN2Q96LZ7 410 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 NPHS2Q9NP85 383 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 NR2E1Q9Y466 385 aa11.62□□□□□ -0.55
PTPRF-204ENST00000412568 A0A0G2JLL6 359 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PECAM1P16284 738 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 CCL14Q16627 93 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PRRT2Q7Z6L0 340 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 JOSD2Q8TAC2 188 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 BRI3BPQ8WY22 251 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 RPRD1AQ96P16 312 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 GCNAQ96QF7 691 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 TSPYL2Q9H2G4 693 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ERVK-5Q9HDB9 667 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 TUBGCP4Q9UGJ1 667 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ARL2BPQ9Y2Y0 163 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PFDN6O15212 129 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PFDN1O60925 122 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 USP12O75317 370 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 GMNNO75496 209 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 SMPD1P17405 629 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 CYP2F1P24903 491 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PDK1Q15118 436 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 TFAP2DQ7Z6R9 452 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ZNF410Q86VK4 478 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 WDR75Q8IWA0 830 aaKnown RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 NDUFAF2Q8N183 169 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 TFB1MQ8WVM0 346 aaKnown RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 NDRG1Q92597 394 aaKnown RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 HES6Q96HZ4 224 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 CXorf56Q9H5V9 222 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 DMAC2Q9NW81 257 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 GTSE1Q9NYZ3 720 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ZFP69BQ9UJL9 534 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ANGPTL3Q9Y5C1 460 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 SLC15A5A6NIM6 579 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 TRIM49D1C9J1S8 452 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 LCA5LO95447 670 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PRKAR2AP13861 404 aaKnown RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 MX2P20592 715 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 COPS2P61201 443 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 YWHAZP63104 245 aaKnown RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 SPRYD7Q5W111 196 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ATG16L1Q676U5 607 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 CES3Q6UWW8 571 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 TRIM67Q6ZTA4 783 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 DCP1BQ8IZD4 617 aaKnown RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 C3orf20Q8ND61 904 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 SGF29Q96ES7 293 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 C12orf42Q96LP6 360 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PSMC3IPQ9P2W1 217 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-204ENST00000412568 CACNG4Q9UBN1 327 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ST3GAL5Q9UNP4 418 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 ATP11BQ9Y2G3 1177 aa11.61□□□□□ -0.55
PTPRF-204ENST00000412568 PDHA1P08559 390 aa11.6□□□□□ -0.55
PTPRF-204ENST00000412568 STIP1P31948 543 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms