RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RNF149Q8NC42 400 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CGRRF1Q99675 332 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 COLEC11Q9BWP8 271 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ZCCHC2Q9C0B9 1178 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 FAM124BQ9H5Z6 455 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 EXOSC4Q9NPD3 245 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ACOT9Q9Y305 439 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 LRRC7Q96NW7 1537 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 BTNL10A8MVZ5 291 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 RPN2P04844 631 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CYP19A1P11511 503 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 GRK3P35626 688 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 LHX1P48742 406 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 BLVRAP53004 296 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SMIM11AP58511 58 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 AMPD2Q01433 879 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ARID5BQ14865 1188 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 INSCQ1MX18 579 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF394Q53GI3 561 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SMYD5Q6GMV2 418 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 WDR49Q8IV35 697 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 S100ZQ8WXG8 99 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 MCEEQ96PE7 176 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SLC25A23Q9BV35 468 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 FUT8Q9BYC5 575 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 TMEM117Q9H0C3 514 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SLITRK2Q9H156 845 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 THAP1Q9NVV9 213 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 WWOXQ9NZC7 414 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PPP2R3BQ9Y5P8 575 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 MYO1GB0I1T2 1018 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ALDH1A2O94788 518 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 FSBPO95073 299 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ABHD2P08910 425 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PMS1P54277 932 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 FOXO4P98177 505 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 PLOD1Q02809 727 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 TSNQ15631 228 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CCDC85BQ15834 202 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 Q4G0T1 1027 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 IYDQ6PHW0 289 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 RAD9BQ6WBX8 426 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 EID3Q8N140 333 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 STK40Q8N2I9 435 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SRBD1Q8N5C6 995 aaKnown RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 MOSPD2Q8NHP6 518 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ACMSDQ8TDX5 336 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF669Q96BR6 464 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-203ENST00000409050 ZFYVE19Q96K21 471 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 OSBPL10Q9BXB5 764 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SLC39A8Q9C0K1 460 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 EHD4Q9H223 541 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 NMRAL1Q9HBL8 299 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 VPS51Q9UID3 782 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 DYRK1BQ9Y463 629 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 CRB1P82279 1406 aa6.3□□□□□ -1.4
SCN1A-203ENST00000409050 SFI1A8K8P3 1242 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PHF20L1A8MW92 1017 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 FAM25AB3EWG3 89 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 FAM25CB3EWG5 89 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 FAM25GB3EWG6 89 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PPP1R3GB7ZBB8 358 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 BCL10O95999 233 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 NR3C2P08235 984 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CCNA2P20248 432 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 AXLP30530 894 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TGFBR2P37173 567 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SKIV2L2P42285 1042 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CPT1AP50416 773 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 FXR1P51114 621 aaKnown RBP eCLIP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 RAB27AP51159 221 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SLC29A2Q14542 456 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF268Q14587 947 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 POLD3Q15054 466 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TDRD10Q5VZ19 366 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PPP4R4Q6NUP7 873 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TRIM51Q9BSJ1 452 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CINPQ9BW66 212 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ADGRE3Q9BY15 652 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 SLC7A5P2Q9GIP4 190 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PIDD1Q9HB75 910 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CCNB1IP1Q9NPC3 277 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 KCNK4Q9NYG8 393 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CRLS1Q9UJA2 301 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TNPO3Q9Y5L0 923 aaKnown RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CNTNAP5Q8WYK1 1306 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 MYMKA6NI61 221 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 QSOX1O00391 747 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ASNA1O43681 348 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 RECQL5O94762 991 aaPredicted RBP6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ALOX5P09917 674 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ITGB6P18564 788 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ARL4DP49703 201 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 PPARDQ03181 441 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 CCDC142Q17RM4 750 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 KLHL12Q53G59 568 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 LRRC38Q5VT99 294 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 TTC23Q5W5X9 447 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ANKMY2Q8IV38 441 aa6.29□□□□□ -1.4
SCN1A-203ENST00000409050 ARID3BQ8IVW6 561 aaPredicted RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms