RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 TDRKHQ9Y2W6 561 aaKnown RBP12.4□□□□□ -0.42
HMGB1-206ENST00000405805 ASTN2O75129 1339 aaPredicted RBP12.4□□□□□ -0.42
HMGB1-206ENST00000405805 TRIM43BA6NCK2 446 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 KRT38O76015 456 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 VCPP55072 806 aaKnown RBP12.4□□□□□ -0.42
HMGB1-206ENST00000405805 CRADDP78560 199 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 SGSM1Q2NKQ1 1148 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 KLC3Q6P597 504 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 FOXR2Q6PJQ5 311 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 CCDC60Q8IWA6 550 aaPredicted RBP12.4□□□□□ -0.42
HMGB1-206ENST00000405805 RNF148Q8N7C7 305 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 UNKQ9C0B0 810 aaKnown RBP12.4□□□□□ -0.42
HMGB1-206ENST00000405805 KLC2Q9H0B6 622 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 BRD8Q9H0E9 1235 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 EPB41L4BQ9H329 900 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 DCLRE1BQ9H816 532 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 ACSS2Q9NR19 701 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 ARL8BQ9NVJ2 186 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 LMCD1Q9NZU5 365 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 SLC12A4Q9UP95 1085 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 IQCA1LA6NCM1 817 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 NDUFB5O43674 189 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 CCNE2O96020 404 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 TNFSF9P41273 254 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 CLCN2P51788 898 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 TRIP10Q15642 601 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 ANKRD22Q5VYY1 191 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 CES3Q6UWW8 571 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 HACE1Q8IYU2 909 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 E2F7Q96AV8 911 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 PIDD1Q9HB75 910 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF229Q9UJW7 825 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 POLIQ9UNA4 740 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 RABL2BQ9UNT1 228 aa12.4□□□□□ -0.42
HMGB1-206ENST00000405805 PSTPIP1O43586 416 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 GTF2BQ00403 316 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 PGM5Q15124 567 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 XKR3Q5GH77 459 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 ANGEL2Q5VTE6 544 aaKnown RBP12.4□□□□□ -0.43
HMGB1-206ENST00000405805 IYDQ6PHW0 289 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 DSTYKQ6XUX3 929 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 POLNQ7Z5Q5 900 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 ALYREFQ86V81 257 aaKnown RBP12.4□□□□□ -0.43
HMGB1-206ENST00000405805 ZCCHC9Q8N567 271 aaKnown RBP12.4□□□□□ -0.43
HMGB1-206ENST00000405805 TTC13Q8NBP0 860 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 MCUQ8NE86 351 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 ZNF570Q96NI8 536 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 SH3GL1Q99961 368 aa12.4□□□□□ -0.43
HMGB1-206ENST00000405805 ZMPSTE24O75844 475 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 GLRA2P23416 452 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 TYK2P29597 1187 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 MTTPP55157 894 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 STX3Q13277 289 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 BLMHQ13867 455 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 ZNF268Q14587 947 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 INAQ16352 499 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 SPDYE2Q495Y8 402 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 IZUMO2Q6UXV1 221 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 GALNT15Q8N3T1 639 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 PDZD8Q8NEN9 1154 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 PPP1R13LQ8WUF5 828 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 TRAPPC12Q8WVT3 735 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 TRIM56Q9BRZ2 755 aaKnown RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 FAM49AQ9H0Q0 323 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 MROH7Q68CQ1 1323 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 ATXN2Q99700 1313 aaKnown RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 SLC26A4O43511 780 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 LIASO43766 372 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 ATP9BO43861 1147 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 HSPA4LO95757 839 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 GJB1P08034 283 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 STAT5BP51692 787 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 YWHAEP62258 255 aaKnown RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 RPL10AP62906 217 aaKnown RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 AP2B1P63010 937 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 ASPHQ12797 758 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 PIGHQ14442 188 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 STXBP2Q15833 593 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 KHDC1Q4VXA5 237 aaKnown RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 TMC5Q6UXY8 1006 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 CCNJLQ8IV13 435 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 CDKL2Q92772 493 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 AAASQ9NRG9 546 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 HACL1Q9UJ83 578 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 PAPPAQ13219 1627 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 AHDC1Q5TGY3 1603 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 AIM2O14862 343 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 USP1O94782 785 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 PDGFRBP09619 1106 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 ACADSP16219 412 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 ADORA2BP29275 332 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 PPIDQ08752 370 aaKnown RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 CRELD2Q6UXH1 353 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 MAP4K3Q8IVH8 894 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 C4orf19Q8IY42 314 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 PSPC1Q8WXF1 523 aaKnown RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 ZNF395Q9H8N7 513 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-206ENST00000405805 CYP39A1Q9NYL5 469 aa12.39□□□□□ -0.43
HMGB1-206ENST00000405805 KLRG2A4D1S0 409 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-206ENST00000405805 CST3P01034 146 aaPredicted RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms